Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq33 143 3e-29 seq17 143 3e-29 seq2 138 1e-27 seq9 134 2e-26 seq7 134 2e-26 seq38 131 2e-25 seq40 129 7e-25 seq16 111 2e-19 seq22 86.0 7e-12 >seq33 Length=41749222 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || || || || || || |||||||| | Sbjct 34672402 ATGCAGATTTTCGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 34672343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 34672342 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 34672283 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| ||||| | | ||||| || Sbjct 34672282 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 34672223 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||||| | || ||| | ||||| ||||| Sbjct 34672222 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACTTCGTGGTGG 34672176 >seq17 Length=65020687 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464 ||||| || || || ||||| ||||| || || || || || || |||||||| || | Sbjct 35302384 ATGCAGATTTTCGTGAAGACCCTTACAGGAAAAACCATCACGCTCGAGGTTGAACTCTCG 35302325 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| | || || || || ||||| ||||| ||||||||||| || || Sbjct 35302324 -GACACTATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 35302266 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || ||||| ||||| | | ||||| || Sbjct 35302265 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCGTACTTTGTCTGACTACAA 35302206 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||| |||||| | || ||| | ||||| ||||| Sbjct 35302205 CATCCAAAAGGAGTCCATCCTTCATTTGGTGTTGAGACTTCGTGGTGG 35302158 >seq2 Length=98408828 Score = 138 bits (152), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | | Sbjct 12204189 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 12204248 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || |||||||||||||| || || || ||||| Sbjct 12204249 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCA 12204308 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 12204309 GCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 12204368 Query 27585 TGTCCAAAAGGAATCCACTCT 27605 |||| || || ||||| || Sbjct 12204369 CATCCAGAAAGAGTCCACCCT 12204389 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| ||||| || || || || || || |||||||| | Sbjct 61256453 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 61256512 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 61256513 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 61256572 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| ||||| | | ||||| || Sbjct 61256573 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 61256632 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||| | | || ||| | ||||| ||||| Sbjct 61256633 ATCCAAAAGGAGTCCACCCTTCGTTTGGTGTTGAGACTTCGTGGTGG 61256679 >seq9 Length=86001432 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||| || || || || | || |||||||| | Sbjct 39797391 ATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCCCGCTCGAGGTTGAACCCTCG 39797450 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || |||| ||||| ||||||||||| || ||| Sbjct 39797451 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCCTGATCAG 39797510 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||||| | | ||||| || Sbjct 39797511 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 39797570 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||||| | || ||| | ||||| ||||| Sbjct 39797571 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACTTCGTGGTGG 39797617 >seq7 Length=85103860 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || | |||||||| || || || ||||| ||| | || Sbjct 11188158 ATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 11188217 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 11188218 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 11188277 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || | || || |||| | ||||| | ||||| || Sbjct 11188278 CAGAGGCTGATCTTTGCAGGCAAAGAGCTGGAAGATGGCTGCACCCTGTCCGACTACAAC 11188337 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| |||| || | ||||| Sbjct 11188338 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 11188384 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || | || || ||||| || || || ||||| ||| | | Sbjct 11187929 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 11187988 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||||||||| || || || || ||||| Sbjct 11187989 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 11188048 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 11188049 GCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11188108 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| |||| || | ||||| Sbjct 11188109 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 11188156 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| | ||||| || || |||||||| || || || |||| ||| | | Sbjct 35411099 AATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACCCTGAAGGTGGAGCCCAG 35411158 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || ||||| || ||||| || || || ||||| Sbjct 35411159 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 35411218 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| ||||| || || |||| || || || | || || Sbjct 35411219 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTTTAATTACAA 35411278 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| | ||||| | ||||| Sbjct 35411279 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGG 35411326 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 36033357 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 36033298 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||||| || || |||||||| ||||| || || || ||||| Sbjct 36033297 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 36033238 Query 27525 GCAGCGTCTAATTTTTGC 27542 |||||| || || ||||| Sbjct 36033237 GCAGCGACTCATCTTTGC 36033220 >seq38 Length=14253900 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||| || || || || || | |||||||| | Sbjct 298909 ATGCAGATTTTCGTAAAGACCCTTAAGGGGAAAACCATCACGTTCGAGGTTGAACCCTCG 298850 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 298849 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 298790 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||||| | | ||||| || Sbjct 298789 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 298730 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||||| | || || | |||| ||||| Sbjct 298729 ATCCAAAAGGAGTCCACCCTTCATTTGGTGCTGAGACTTCATGGTGG 298683 >seq40 Length=10521589 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 9789936 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 9789995 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||||| || || || || ||||| Sbjct 9789996 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAT 9790055 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||| | || ||||||| | |||| | ||||| || Sbjct 9790056 CAGAGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTACAAC 9790115 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || |||||| | || || Sbjct 9790116 ATCCAGAAAGAGTCCACTTTGCACCT 9790141 >seq16 Length=69618829 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| ||||||||||| || |||||| | || || Sbjct 24326545 AAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGAT 24326486 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 || ||||| ||||| | || ||| ||||| | | ||||| || |||||||||| Sbjct 24326485 CTTCGCTGGCAAGCAGTTGGAAGATAGCCGTACTTTGTCTGACTACAACATCCAAAAGGA 24326426 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| |||| || ||| | ||||| ||||| Sbjct 24326425 GTCCACCCTTTATCTGGTGTTGAGACTTCGTGGTGG 24326390 >seq22 Length=61813736 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||||||||||| |||| || || ||||| || |||||| |||| | Sbjct 31288519 ATGCAGCTTTTTGTCAAGACCCTTAGGGGGAAAACTATCACACTTGAGATTGACCCCTCA 31288460 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | | ||| || |||||| | || || ||||||||||| || || Sbjct 31288459 GACACTATAGAAAATATAAGGGCCAAGATTCAGAATAAAGAAGGAATTCCTCCTGATTAG 31288400 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||| ||||||| | || |||| | ||| | ||||| || Sbjct 31288399 CAGAGGCTGATCTTCCCTGCTAAGCAAGTGGAAGATGGCCTTACTTTCTTTGACTACAAC 31288340 Query 27586 GTCCAAAAGG 27595 | ||||||| Sbjct 31288339 ATTCAAAAGG 31288330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265238545200