Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq8 183 4e-41 >seq8 Length=88571779 Score = 183 bits (202), Expect = 4e-41 Identities = 569/873 (65%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 || |||| || ||||||||||| ||||| || ||| | || |||||||| || ||| | Sbjct 47382351 GAGGAGGCAGACTTTCCCATCGCGTACTCCATAGTGGTTCATCACAAGATTGAAATGCTT 47382292 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||| | ||||||||||||||||| || ||||| |||| ||| | ||||||||| Sbjct 47382291 GAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCACGTGGACAAA 47382232 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || | | || | || | ||| || | | || ||| || ||||| |||| Sbjct 47382231 AAAGCAGAGGAGCCCTTTTTAGCCGCGGTGAC--GGGCATTGCGTCCTGCTTGAAGAACG 47382174 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| || |||| | ||| | || | ||||||||||| || ||||| | Sbjct 47382173 TCTTTGTGGCCAGCCAGCTGGAGAGCGTCATTTATGCGTCCTGGAGTCGGGTTCAGGCTG 47382114 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||||| ||||||| ||||||| || | | || |||| |||| || |||||| Sbjct 47382113 ACCTCAACTGCATGAGGGACCTGTACAGCATGAGTGCAAACTGGAAGTACTTGATCAACC 47382054 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGC-- 14038 | ||||| ||||||||||| || || ||||||||||| || || || || ||| | Sbjct 47382053 TCTGCGGTATGGACTTCCCTCTGAAAACCAACCTGGAAATGGTCAGGAAACTCAAGTCAT 47381994 Query 14039 -CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGC--CCAACCACAAGCTGCACCG 14095 |||||||| | ||| |||||| | |||| |||| |||| ||||| | | | Sbjct 47381993 TCCTGGGCG---AAAACAACCTGGAAACCGAGAAGATGCCTCCAA--ACAAGGAGGAAAG 47381939 Query 14096 CATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAA 14155 | |||| | ||| || | || ||| | || ||||| || | ||| Sbjct 47381938 GTGGAAGAAGCGACACACCGTTG---TCGACGGGAAGCTGACAAACACTGGGGTGGCCAA 47381882 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 |||| |||||| |||| | || | || | || | ||| ||||||| ||||| | Sbjct 47381881 AGCCCAGCCGCCCCTCACAACTCCTCTTTTCTCAGGCAGCGCCTACTTTGTGGTCAGTAG 47381822 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 ||| | ||| | || || || | | | | | | ||||| | ||| | Sbjct 47381821 GGAATACGTAGGCTATGTGCTAGAAAATGGGGACATCCAAAAGTTCATGGAGTGGGCACA 47381762 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 ||||||||| ||||| || ||| |||| ||||||||| | || || | | | || | | Sbjct 47381761 GGACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATCCAAAGGA--TCCCTGAAGTC 47381704 Query 14336 CGGGGGGATCCCCGTTCACGTC--AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGG 14393 | || || || || | | ||||| ||| || |||||| || | ||| Sbjct 47381703 CCTGGTTCTCTCCCCTCGAGCCATAAGTATGACTTGTCCGACATGAATGCTGTCGCTAGG 47381644 Query 14394 TTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGC 14453 || ||||||||||| |||| || || ||| | ||||| || | ||||| || ||| Sbjct 47381643 TTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCCTTACCCACCGTGC 47381584 Query 14454 GACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAG 14513 ||| |||| || | | || | ||||| ||||| | | ||| ||| ||| || Sbjct 47381583 AGCGGAGTCCATGTACGCTCCGTGTGCATTTTCGGAGCTGCTGACTTGAGCTGGATGCTT 47381524 Query 14514 AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | ||| | |||||||| ||||| ||| Sbjct 47381523 CGCAAACACCACTTTTTCGCCAATAAGTTTGAC 47381491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658687036089600