Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq26 374 7e-99 seq8 140 3e-28 seq22 125 6e-24 seq13 118 9e-22 seq46 114 1e-20 seq17 91.5 1e-13 >seq26 Length=66536344 Score = 374 bits (414), Expect = 7e-99 Identities = 501/690 (73%), Gaps = 5/690 (1%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| ||| ||||| | || |||||| | ||||| || || | | || ||||| Sbjct 25929482 TGGGAAAGG-TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGT 25929540 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || ||||||| | |||||||||| || || || | ||| || ||| ||| | Sbjct 25929541 AAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTG 25929600 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| || || || | |||||||| ||||| ||||| || || || ||||| | Sbjct 25929601 CAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATAT 25929660 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 30076 | |||||||||||||||||||| || || ||||| || ||||| || || || ||||| Sbjct 25929661 CTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT-ACATAGAATTGACAG 25929719 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30136 | ||| ||||| ||||| || ||||| ||| | ||||| ||||||||||| |||| | Sbjct 25929720 AGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATG 25929779 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| || ||| || | ||||| ||| | | ||||||||||| || Sbjct 25929780 ATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 25929839 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || |||||||| |||| ||| || |||| ||||| || ||||| |||||| Sbjct 25929840 ACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCAC 25929899 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 30315 ||||| || || || || ||||| || || || | | |||| ||| ||| |||| Sbjct 25929900 TGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTC 25929958 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 || ||| |||| ||| || ||||| |||||||| | || || || || || ||||| Sbjct 25929959 CAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTT 25930018 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435 | |||||||| || ||| |||||||||| ||||||| ||| ||||||| || || Sbjct 25930019 AGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACAC 25930078 Query 30436 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 30495 | ||||| ||||| || ||||| | | | ||| ||| || |||| || || Sbjct 25930079 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAA 25930138 Query 30496 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30525 ||| |||||| || |||||||| | ||| Sbjct 25930139 CACCGACAAGGTGCCGGTGCCCGTGCGGTC 25930168 >seq8 Length=88571779 Score = 140 bits (154), Expect = 3e-28 Identities = 215/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||| ||||||||||| || || || || ||||| || Sbjct 15948542 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATC 15948601 Query 30283 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || || | | |||| ||| ||| |||||| ||| |||| ||| || ||||| | Sbjct 15948602 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 15948660 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 ||||||| | || || || || || ||||| | |||||||| || ||| |||| Sbjct 15948661 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACC 15948720 Query 30402 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACT 30461 |||||| ||||||| ||| ||||||| || || | ||||| ||||| || ||||| | Sbjct 15948721 ACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATT 15948780 Query 30462 GTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCC 30521 | | ||| ||| || |||| || ||||| |||||| || |||||||| | Sbjct 15948781 CATCTCTCAGGTTGTATCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGC 15948840 Query 30522 TGTC 30525 ||| Sbjct 15948841 GGTC 15948844 Score = 132 bits (146), Expect = 4e-26 Identities = 131/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 15942880 TAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGG 15942939 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 30059 || || || ||||| || |||||||||||||||||||| || || ||||| || |||| Sbjct 15942940 CACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGC 15942999 Query 30060 TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | || || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 15943000 T-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 15943045 >seq22 Length=61813736 Score = 125 bits (138), Expect = 6e-24 Identities = 252/372 (68%), Gaps = 19/372 (5%) Strand=Plus/Plus Query 30089 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 30148 |||||||| |||| ||| | ||||| ||||||||| | || | ||||| | || Sbjct 17833802 GGAGGAAGTACCATAAGGGGAAGATCTTTTGGGTTCCAGACACAAATCATGATTCTTCTC 17833861 Query 30149 TCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCC 30208 || || || ||| | ||| ||| | | ||||||||||| || || || Sbjct 17833862 TCGTCAGGATTGGTTTTGAGT--GTCAATCACTTTTTGCAGCTGTTCTACTCCT------ 17833913 Query 30209 GAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30268 || || ||| || |||| ||||||| ||||| ||||||||||| || || Sbjct 17833914 --------TGACC-CATATCTTTGTAGTCTGCTCAAAAATGTCTCCACTGGAAACCATAA 17833964 Query 30269 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30327 || || |||||||| || || | | |||| ||| ||| | |||||| ||| ||| Sbjct 17833965 ACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGAATCCCATGCTGTCCAGAAAAACTCG 17834023 Query 30328 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA 30387 ||| || ||||| |||||||| | || || || || || ||||| | |||||| | Sbjct 17834024 GGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGCA 17834083 Query 30388 CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30447 ||| ||| |||||||||| ||||| || || ||||| | || || | ||||| || Sbjct 17834084 TCCTTTGATAAACCACAGCAACTCCTTCAAAACACCCTTCTAGAACACTCGTTTGGTTGT 17834143 Query 30448 GAGGAGGGGAAA 30459 ||| || | ||| Sbjct 17834144 GAGCAGAGAAAA 17834155 >seq13 Length=46045664 Score = 118 bits (130), Expect = 9e-22 Identities = 128/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 164539 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 164480 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC-CGTCGC 30059 || || || ||||| | || ||||||||||||||||| || || ||||| | |||| Sbjct 164479 CACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGC 164420 Query 30060 TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | || || || || || | ||| ||||| ||||| || ||||| ||| Sbjct 164419 T-ACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 164374 >seq46 Length=7398006 Score = 114 bits (126), Expect = 1e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 29938 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29997 || ||| || ||| ||| || |||||||| ||||| || | ||| |||| ||||| || Sbjct 7346702 TTTTAGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAA 7346761 Query 29998 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GT 30056 ||| || || || ||||| || || ||||||||||||||||| || || ||||| || | Sbjct 7346762 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 7346821 Query 30057 CGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | || || || || ||||| | ||| ||||| || || || ||||| ||| Sbjct 7346822 CACT-ACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAGG 7346870 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 8177119 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 8177178 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 8177179 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 8177226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406279029662820