Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 185 7e-42 seq26 167 2e-36 seq5 122 7e-23 seq8 96.9 3e-15 seq13 93.3 3e-14 seq46 84.2 2e-11 >seq2 Length=98408828 Score = 185 bits (204), Expect = 7e-42 Identities = 207/273 (76%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 1255 TTAAG-TGTTTTTTAGAAACGC-CACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAA 1312 ||||| |||| | | ||||||| | |||||| | ||||| |||||||| ||| || Sbjct 56213000 TTAAGATGTTCTCT-GAAACGCTCCCAAGAACCCTTGATTGTGACATGGCAGAAAAAGAA 56212942 Query 1313 AGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCC 1372 ||| ||||||||||||||||| ||||| || || | ||| || ||||| || ||||| Sbjct 56212941 AGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCC 56212882 Query 1373 AGCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTT 1432 ||||| | ||| | | ||||| |||||||| ||||| ||||||| || ||||| Sbjct 56212881 TGCATATAGAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTT 56212822 Query 1433 CTGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATC 1492 |||||||||||| |||| || || || ||||||| |||| | || || ||||||| || Sbjct 56212821 CTGGAACACAACCCTGGACGACGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTC 56212762 Query 1493 TGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||||||||| ||||| | || || || ||||| Sbjct 56212761 TGGGAAGATCTCAGGGACAGCCTGCCTCACCCT 56212729 >seq26 Length=66536344 Score = 167 bits (184), Expect = 2e-36 Identities = 418/625 (67%), Gaps = 34/625 (5%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| ||||| || ||||||| || | ||| ||||| || | || || Sbjct 25929507 AGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAAATATGTGCATCTCCCAAGGTGTGG 25929566 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || || || || | || ||||| ||| ||||||||||| || | || ||| Sbjct 25929567 ACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCAATCATGTAGGTAAGCAGGGCATAG 25929626 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || |||||||| ||||| ||| | || |||||||| | |||||| Sbjct 25929627 CTGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAA 25929686 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT- 118694 || |||||||| || || ||||| || |||| | | || || |||||||| |||| Sbjct 25929687 GACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 25929746 Query 118695 ---GGAA-CTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTGCTAT- 118744 |||| || ||||| |||||||| | ||||| |||||| || Sbjct 25929747 AGGGGAAGATCTTTTGGG-----TTCCAGGC-----ACACATGATGATTCTTCTGTCATC 25929796 Query 118745 ATGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTAT 118804 | || | || || ||||| | || || | ||| || || || | || | | Sbjct 25929797 AGGGCTGGTTTTG-ATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGT 25929855 Query 118805 ACTGAGACTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACA 118863 | | || || ||| |||| || ||||| |||||| |||||| || ||||||||||| Sbjct 25929856 AATCTGATTC-CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACT 25929914 Query 118864 GGCCCCAGAT---CTCCCTG--GGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTT 118918 || ||||||| || |||| | | | |||| || | || | |||| ||| Sbjct 25929915 GGGCCCAGATCCCCTTCCTGTCGTGCAGAGAATC----CCAGGCTGTC-CAGAAAATCTC 25929969 Query 118919 TTGACCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAG 118978 |||||||| |||| ||| || |||||||| | ||| || |||| ||||| | Sbjct 25929970 GGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGG 25930029 Query 118979 AACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTG 119038 | || | | |||||| || | ||||| | |||||| |||| || ||| ||| |||| Sbjct 25930030 ATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTG 25930089 Query 119039 TAAACAGTGGAAACTGACCTCTAAG 119063 | | ||| ||||| | | |||| || Sbjct 25930090 TGAGCAGAGGAAATTCATCTCTCAG 25930114 >seq5 Length=88288230 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 20648486 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 20648427 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 20648426 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 20648367 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 20648366 ATCGCCCTGTGGATGACTGA 20648347 >seq8 Length=88571779 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 15942881 AGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 15942940 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||| ||| | || |||||||| | ||||| || |||||||| || || Sbjct 15942941 ACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGCT 15943000 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | | || || |||||||| |||| Sbjct 15943001 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 15943041 >seq13 Length=46045664 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 164538 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 164479 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||| || |||| |||||||| | |||||||| ||||||| || || Sbjct 164478 ACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGCT 164419 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || || | | | || || |||||||| |||| Sbjct 164418 ACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCAT 164378 >seq46 Length=7398006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||| | | ||| ||||||||||| || | || ||| |||| | || || || Sbjct 7346706 AGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAAGGGC 7346765 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 7346766 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACT 7346825 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | | || || || ||||| |||| Sbjct 7346826 ACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCAT 7346866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414444799152940