Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq33 127 1e-24 seq17 127 1e-24 seq38 116 3e-21 seq9 113 3e-20 seq2 113 3e-20 seq7 95.1 8e-15 seq40 82.4 5e-11 >seq33 Length=41749222 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| || || Sbjct 34672402 ATGCAGATTTTCGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 34672343 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || ||||| Sbjct 34672342 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 34672283 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || |||||||| | || ||||| || |||||| Sbjct 34672282 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 34672223 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||||| || || || Sbjct 34672222 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAG 34672188 >seq17 Length=65020687 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || |||||||| ||||| ||||| ||||| | || Sbjct 35302384 ATGCAGATTTTCGTGAAGACCCTTACAGGAAAAACCATCACGCTCGAGGTTGAACTCTCG 35302325 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| || || || || ||||| | || || ||||| Sbjct 35302324 GACACTATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 35302265 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| || || ||||| || |||||| Sbjct 35302264 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCGTACTTTGTCTGACTACAAC 35302205 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||||||| | ||||| || || || Sbjct 35302204 ATCCAAAAGGAGTCCATCCTTCATTTGGTGTTGAG 35302170 >seq38 Length=14253900 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| | ||| ||||| ||||| |||| ||||| || || Sbjct 298909 ATGCAGATTTTCGTAAAGACCCTTAAGGGGAAAACCATCACGTTCGAGGTTGAACCCTCG 298850 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || ||||| Sbjct 298849 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 298790 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | || ||||| || |||||| Sbjct 298789 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 298730 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | ||||| || Sbjct 298729 ATCCAAAAGGAGTCCACCCTTCATTTGGT 298701 >seq9 Length=86001432 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| | ||| ||||| ||| | ||||| ||||| || || Sbjct 39797391 ATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCCCGCTCGAGGTTGAACCCTCG 39797450 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || | || ||||| | || || ||||| Sbjct 39797451 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCCTGATCAG 39797510 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | || ||||| || |||||| Sbjct 39797511 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 39797570 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||||| || || || Sbjct 39797571 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAG 39797605 >seq2 Length=98408828 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 61256453 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 61256512 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || ||||| Sbjct 61256513 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 61256572 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || |||||||| | || ||||| || |||||| Sbjct 61256573 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 61256632 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | | ||| || || || Sbjct 61256633 ATCCAAAAGGAGTCCACCCTTCGTTTGGTGTTGAG 61256667 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| || || || || ||| Sbjct 12204189 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 12204248 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || ||| | || || || | Sbjct 12204249 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGTATCCCCCCTGACC 12204307 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| |||||||| |||||||| | ||||| | ||| |||| Sbjct 12204308 AGCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 12204367 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 12204368 ACATCCAGAAAGAGTCCAC 12204386 >seq7 Length=85103860 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || || || || ||||| || || || || ||| Sbjct 11187929 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 11187988 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| ||||| | || || || | Sbjct 11187989 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACC 11188047 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| |||||||| |||||||| | ||||| | ||| |||| Sbjct 11188048 AGCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 11188107 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 11188108 ACATCCAGAAAGAGTCCAC 11188126 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||| | || ||||| || || || || ||||| || | || || || Sbjct 35411097 AAAATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACCCTGAAGGTGGAGCCC 35411156 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || || ||||| || | || || || Sbjct 35411157 AGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 35411216 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 35411217 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTTTAATTAC 35411276 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 35411277 AACATCCAGAAAGAGTCCAC 35411296 >seq40 Length=10521589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || |||||||| || || || || Sbjct 9789933 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 9789992 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 9789993 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCCGA 9790051 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | |||||||||||||| | ||||| || | | | || ||| || Sbjct 9790052 CCATCAGAGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTA 9790111 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 9790112 CAACATCCAGAAAGAGTCCACTTTGCA 9790138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983503018180