Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq33 149 1e-30 seq2 149 1e-30 seq7 134 3e-26 seq9 131 4e-25 seq17 122 2e-22 seq40 116 9e-21 seq16 113 1e-19 >seq33 Length=41749222 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | || || ||||| || ||||||| ||||| || | |||||| Sbjct 34672181 ACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 34672240 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || | || || || || ||||| || Sbjct 34672241 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 34672300 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 34672301 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 34672360 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || ||||| | || || | ||| | ||||| Sbjct 34672361 CGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq2 Length=98408828 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | | || ||||| || ||||||| ||||| || | |||||| Sbjct 61256674 ACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 61256615 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || | || || || || ||||| || Sbjct 61256614 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 61256555 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 61256554 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 61256495 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || ||||| | || || ||||| | ||||| Sbjct 61256494 CGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 || ||||| ||||| |||| ||||| |||| || || | |||||||| ||||| || Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || | || ||||| || || ||||| |||||||| ||||||||| | Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || || || || | ||||| |||||||| |||| Sbjct 12204269 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGG 12204210 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 12204209 GTCTTCACAAAGATCTGCATT 12204189 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 ||| || |||| |||| || || ||| | || || ||||| ||||| || |||||||| Sbjct 67527137 GGTGATGACCAAATTTATAATGTAATTGTCACAGCCCATGCATTTGTAATAATTTTCTTC 67527078 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 | ||| |||| | || || ||||| || || || ||| || || | || ||| | Sbjct 67527077 ATAGTTGTGCCAATAATAATTGGCGGATT-GGTAACTGACCTGTCCCACTTATAATTAGA 67527019 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC---- 7718 | || ||||| || || ||| | | |||||||||||||| ||| || |||| || Sbjct 67527018 GAACCAGATATAGCATTCCCATGAATAAACAATATAAGTTTCTGACTATTACCCCCATAT 67526959 Query 7719 TTCCT--TATTTCTAG 7732 ||||| |||| |||| Sbjct 67526958 TTCCTCCTATTACTAG 67526943 >seq7 Length=85103860 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 11188142 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 11188083 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || || ||||| || | || ||||| || || || ||||||||||| Sbjct 11188082 TTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 11188023 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 11188022 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 11187963 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || || ||||| | || | |||||| Sbjct 11187962 CTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 11188370 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATC 11188311 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||| || || || ||||| || | || ||||| || || || || |||||||| Sbjct 11188310 TTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 11188251 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 11188250 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 11188191 Query 225681 CTTGCC 225686 |||||| Sbjct 11188190 CTTGCC 11188185 >seq9 Length=86001432 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | || || ||||| || ||||||| ||||| || | |||||| Sbjct 39797612 ACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 39797553 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| || | || || || || ||||| || Sbjct 39797552 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 39797493 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| | |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 39797492 TTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 39797433 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||| || || ||| | | || || | ||| | ||||| Sbjct 39797432 CGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq17 Length=65020687 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | || || |||| || ||||||| ||||| || | |||||| Sbjct 35302163 ACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 35302222 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||| |||||||| ||||| ||||| || | || || || || ||||| || Sbjct 35302223 ACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 35302282 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| || ||| ||| || ||||| ||| ||| || || | Sbjct 35302283 TTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAG 35302342 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || || || | || || | ||| | ||||| Sbjct 35302343 CGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq40 Length=10521589 Score = 116 bits (128), Expect = 9e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| | |||||| ||||| |||| ||||| |||| | || | ||||| || ||| Sbjct 9790141 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGC 9790082 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 | ||| || || || || || | || |||||||| || || |||||||||||||||||| Sbjct 9790081 TACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATC 9790022 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| ||||||||||| || || || || | ||||| |||||||| Sbjct 9790021 TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCT 9789962 Query 225688 GTCA 225691 |||| Sbjct 9789961 GTCA 9789958 >seq16 Length=69618829 Score = 113 bits (124), Expect = 1e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || | || ||||| || ||||||| ||||| || | |||||| Sbjct 24326395 ACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 24326454 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | | |||||| | |||||| ||||||||||| || | || || || || ||||| || Sbjct 24326455 ACGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 24326514 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||| || |||||||| ||| ||| ||| || ||||| Sbjct 24326515 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTC 24326556 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 ||||| || || || |||||| | || || || ||||| ||||||||||||||||| Sbjct 61619395 CTTCAGTATCTGGCTCCATACTCTGGCTGCTCCATGGGAGAGTATTTTAGAGATAATGGC 61619454 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 || |||||||| ||||||||||| |||||| ||||| Sbjct 61619455 AAGCATGCTTTGATCATCTACGACGATTTATCCAAACA 61619492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192434405596490