Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq26 342 4e-89 seq8 140 3e-28 seq13 134 1e-26 seq46 131 1e-25 seq22 113 4e-20 seq17 91.5 1e-13 >seq26 Length=66536344 Score = 342 bits (378), Expect = 4e-89 Identities = 489/690 (71%), Gaps = 5/690 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| ||||| | || |||||||| |||| || || | || | |||| Sbjct 25929482 TGGGAAAGG-TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGT 25929540 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| |||||||||||| || || || | ||| || ||| ||| | Sbjct 25929541 AAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTG 25929600 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| || || || | |||||||| ||||| |||||||| || || ||||| | Sbjct 25929601 CAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATAT 25929660 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 29848 | || |||||||||||||||||||| || ||||| || ||||| || || || ||||| Sbjct 25929661 CTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT-ACATAGAATTGACAG 25929719 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | ||||||||| ||||| || ||||| || | ||||| |||||||||||||||| | Sbjct 25929720 AGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATG 25929779 Query 29909 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 29968 ||||| | ||||| || ||| || | ||||| ||| | | ||||||||||| || Sbjct 25929780 ATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 25929839 Query 29969 ACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCAC 30028 || || |||||||| |||| | ||||| |||||| Sbjct 25929840 ACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCAC 25929899 Query 30029 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 30087 ||||| || || || || ||||| || || || | | |||| ||| ||| |||| Sbjct 25929900 TGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTC 25929958 Query 30088 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30147 || ||| |||| ||| || ||||| |||||||| | || || || ||| || ||||| Sbjct 25929959 CAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTT 25930018 Query 30148 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30207 | |||||||| || ||| |||||||||| ||||||| ||| ||||||| || || Sbjct 25930019 AGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACAC 25930078 Query 30208 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAA 30267 | ||||| ||||| || ||||| | | | ||| ||| ||| |||| || || Sbjct 25930079 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAA 25930138 Query 30268 CATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || |||||| || ||||| || | ||| Sbjct 25930139 CACCGACAAGGTGCCGGTGCCCGTGCGGTC 25930168 >seq8 Length=88571779 Score = 140 bits (154), Expect = 3e-28 Identities = 132/166 (80%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 15942880 TAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGG 15942939 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGC 29831 ||| || || ||||| || || |||||||||||||||||||| || ||||| || |||| Sbjct 15942940 CACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGC 15942999 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || ||||| | ||||||||| ||||| || ||||| || Sbjct 15943000 T-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 15943044 Score = 127 bits (140), Expect = 2e-24 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAA 30075 ||||| ||||||||||| || || || || ||||| || || || | | |||| ||| Sbjct 15948564 AAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAA 15948622 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||| ||| |||| ||| || ||||| |||||||| | || || || Sbjct 15948623 TCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGA 15948682 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| || ||||| | |||||||| || ||| |||||||||| ||||||| ||| | Sbjct 15948683 GGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCC 15948742 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGC 30255 |||||| || || | ||||| ||||| || ||||| | | | ||| ||| ||| | Sbjct 15948743 CTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCAC 15948802 Query 30256 CTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 ||| || |||| |||||| || ||||| || | ||| Sbjct 15948803 CTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCGGTC 15948844 >seq13 Length=46045664 Score = 134 bits (148), Expect = 1e-26 Identities = 131/166 (79%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 164539 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 164480 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC-CGTCGC 29831 ||| || || ||||| | ||||||||||||||||||||||| || ||||| | |||| Sbjct 164479 CACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGC 164420 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || || || | ||||||||| ||||| || ||||| || Sbjct 164419 T-ACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 164375 >seq46 Length=7398006 Score = 131 bits (144), Expect = 1e-25 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 29710 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29769 || ||| || ||| ||| || |||||||| ||||| || | ||| |||| ||||| || Sbjct 7346702 TTTTAGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAA 7346761 Query 29770 GGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GT 29828 |||||| || || ||||| || ||||||||||||||||||||||| || ||||| || | Sbjct 7346762 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 7346821 Query 29829 CGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || || ||||| | ||||||||| || || || ||||| || Sbjct 7346822 CACT-ACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAG 7346869 >seq22 Length=61813736 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAA 30075 ||||| ||||||||||| || || || || |||||||| || || | | |||| ||| Sbjct 17833941 AAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGAA 17833999 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| | |||||| ||| ||| ||| || ||||| |||||||| | || || || Sbjct 17834000 TCCCATGCTGTCCAGAAAAACTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGA 17834059 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| || ||||| | |||||| | ||| ||| |||||||||| ||||| || || | Sbjct 17834060 GGACAGTTCTTTAGCATTTGTGCATCCTTTGATAAACCACAGCAACTCCTTCAAAACACC 17834119 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 |||| | || || | ||||| ||||| || | ||| Sbjct 17834120 CTTCTAGAACACTCGTTTGGTTGTGAGCAGAGAAAA 17834155 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 8177119 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 8177178 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| |||||| |||||| Sbjct 8177179 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 8177226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406131841027810