Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq26 383 1e-101 seq8 136 3e-27 seq13 123 2e-23 seq46 120 2e-22 >seq26 Length=66536344 Score = 383 bits (424), Expect = 1e-101 Identities = 503/690 (73%), Gaps = 5/690 (1%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| ||||| | || |||||| | ||||| || || | |||| ||||| Sbjct 25929482 TGGGAAAGG-TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGT 25929540 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| |||||||||||| || || || | ||| || ||| ||| | Sbjct 25929541 AAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTG 25929600 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| || || || | |||||||| ||||| ||||| || || || ||||| | Sbjct 25929601 CAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATAT 25929660 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCGCTTACGTAAAACTGACAT 27342 | |||||||||||||||||||| || || ||||| ||| |||| ||| || || ||||| Sbjct 25929661 CTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC-TACATAGAATTGACAG 25929719 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402 | ||| ||||| ||||| || ||||| ||| | ||||| ||||||||||| |||| | Sbjct 25929720 AGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATG 25929779 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462 ||||| | ||||| || ||| || | ||||| ||| | | ||||||||||| || Sbjct 25929780 ATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 25929839 Query 27463 ACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 || || |||||||| ||| ||| || |||| ||||| || ||||| ||||| Sbjct 25929840 ACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCAC 25929899 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 27581 ||||| || || || || ||||| || || || | | |||| ||| ||| |||| Sbjct 25929900 TGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTC 25929958 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 || ||| |||| ||| || ||||| |||||||| | || || || ||| || ||||| Sbjct 25929959 CAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTT 25930018 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 | |||||||| || ||| |||||||||| ||||||| ||| ||||||| || || Sbjct 25930019 AGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACAC 25930078 Query 27702 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 27761 | ||||| ||||| || ||||| | | | ||| ||| || |||| || || Sbjct 25930079 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAA 25930138 Query 27762 CACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 ||| |||||| || |||||||| | ||| Sbjct 25930139 CACCGACAAGGTGCCGGTGCCCGTGCGGTC 25930168 >seq8 Length=88571779 Score = 136 bits (150), Expect = 3e-27 Identities = 132/167 (79%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 15942880 TAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGG 15942939 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCGC 27325 || || || ||||| || |||||||||||||||||||| || || ||||| ||| |||| Sbjct 15942940 CACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGC 15942999 Query 27326 TTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 15943000 -TACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 15943045 >seq13 Length=46045664 Score = 123 bits (136), Expect = 2e-23 Identities = 129/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 164539 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 164480 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCGC 27325 || || || ||||| | || ||||||||||||||||| || || ||||| | | |||| Sbjct 164479 CACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGC 164420 Query 27326 TTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| || || || || | ||| ||||| ||||| || ||||| ||| Sbjct 164419 -TACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 164374 >seq46 Length=7398006 Score = 120 bits (132), Expect = 2e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27204 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 || ||| || ||| ||| || |||||||| ||||| || | ||| |||| ||||| || Sbjct 7346702 TTTTAGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAA 7346761 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATC 27323 ||| || || || ||||| || || ||||||||||||||||| || || ||||| |||| Sbjct 7346762 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 7346821 Query 27324 GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| || || ||||| | ||| ||||| || || || ||||| ||| Sbjct 7346822 CACTACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAGG 7346870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369478671157385