Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 399 3e-106 seq26 342 7e-89 seq9 244 1e-59 seq42 201 2e-46 seq87 194 2e-44 seq73 114 2e-20 seq7 84.2 3e-11 >seq4 Length=96435083 Score = 399 bits (442), Expect = 3e-106 Identities = 647/925 (70%), Gaps = 13/925 (1%) Strand=Plus/Plus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | ||| Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 || || ||||| || ||||| || || || || || ||||| | ||| ||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 || ||||||||||| || | || |||| || | || |||| || || || || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || |||||||| || || ||||||| | || ||||| || || || || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || || |||||||| |||||||| || || | | || || | | || || | | Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGTTGATAATGATTTCTTGT 65464156 Query 48096 ACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 || ||| ||| || || ||| || || | ||||| | || ||||| || Sbjct 65464157 ACTCTTTGCTCCGGCGGCTTGTGTAC--CAGGTGCCTGAACATCAGGCAGGCAAAGCAAC 65464214 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 | || | ||| |||||||| ||||| | ||||| ||||| || || || ||||| |||| Sbjct 65464215 AGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTC 65464274 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | ||||| |||||||| ||||||| | | || || ||||| |||| || ||||| || | Sbjct 65464275 CCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCACAG 65464334 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT----ATCCACCGTTGT 48329 | ||||| || || || ||||| || | ||||| |||| ||||| || | Sbjct 65464335 CAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCAGG 65464394 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| || |||||||| || |||||||||||||| || |||||||| |||||| | | Sbjct 65464395 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 65464454 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG-AAT 48448 | || ||| |||||||| ||||||||| || | ||||| |||||||| || || || Sbjct 65464455 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTTAT 65464514 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 ||||| || || || || || || || ||||| | || ||||| | ||| || || Sbjct 65464515 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTG 65464574 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 | || || || ||| || ||||| ||||| |||||||| |||||||| || || | Sbjct 65464575 GCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCCAG 65464634 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 || || ||||||| | | |||| || |||| | ||||| | ||||| || Sbjct 65464635 GACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTT 65464694 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 || | || || || ||||| ||||| || || ||||| ||||| || ||||| | ||| Sbjct 65464695 GGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCA 65464754 Query 48689 TATATCACTGTATTGGATTGGGAAA 48713 |||||| ||||| || ||||||| Sbjct 65464755 GATATCATGGTATTCGA-TGGGAAA 65464778 >seq26 Length=66536344 Score = 342 bits (378), Expect = 7e-89 Identities = 633/924 (69%), Gaps = 16/924 (2%) Strand=Plus/Plus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 |||||| |||| || | |||| ||| ||| || | || || || |||| | ||| Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 || |||||||| || ||||| | || || || || ||||| | ||| |||||||||| Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 || ||||| ||||| || | || |||| || | || |||| || || || | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || |||||||| || || | ||||| | || ||||| | || || || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || || |||||||| |||||| | || | || | || || | | || || | | Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGTTGATAATGATTTCTTGT 31519371 Query 48096 ACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 || ||| ||| || || ||| || || | ||||| | || ||||| ||| Sbjct 31519372 ACTCTTTGCTCTGGCGGCTTGCTTAC--CAGGTGCCTGAACATCAGGCAGGCAAAGCCAC 31519429 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 | || | || |||||||| ||||| | || || |||||||| || || ||||| |||| Sbjct 31519430 AGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAGTC 31519489 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | |||| |||||||| ||||||| ||| ||||| ||||| ||||| ||| ||||||| | Sbjct 31519490 CCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTACAG 31519549 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT----ATCCACCGTTGT 48329 | ||||| || || ||| ||||| || | | | |||| | ||||| || | Sbjct 31519550 CAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCAGG 31519609 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| ||||||| ||| || |||||||||||||| || |||||||| |||||| | | Sbjct 31519610 GCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 31519669 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| ||||||| | || || || | ||||| |||||||| || || | Sbjct 31519670 CTCTCTTTGGAATCTTTA----ATGTGTCAATGAGGAGACTGTACATTTCAGAATGTTTG 31519725 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 ||||| || || || || || || || ||||| | || ||||| | ||| || || Sbjct 31519726 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGG 31519785 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | ||| || || ||| || ||||| ||||| |||||||| || ||||| || || | Sbjct 31519786 CTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCAGG 31519845 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 || || ||||||| | | |||| | |||| | | ||| | ||||| || Sbjct 31519846 ACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTAGTGTTGAATATCCTTG 31519905 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCAT 48689 || | || || || ||||||||||| || | ||||| ||||| || ||||| | ||| Sbjct 31519906 GAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGCCAG 31519965 Query 48690 ATATCACTGTATTGGATTGGGAAA 48713 |||||| ||||| | ||||||| Sbjct 31519966 ATATCATGGTATT-CAATGGGAAA 31519988 >seq9 Length=86001432 Score = 244 bits (270), Expect = 1e-59 Identities = 433/626 (69%), Gaps = 14/626 (2%) Strand=Plus/Plus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | ||| Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 || | ||||| || ||||| || || || || || ||||| | ||| ||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 | ||||| ||||| || | || |||| || | ||||||| || || || || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || |||||||| || || ||||||| || | || || || || || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || || |||||||| |||||||| || || || | || || | | || || | | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGATGATTTCTTGT 36370001 Query 48096 ACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 || ||| ||| || || ||| || || | ||||| | || ||||| |||| Sbjct 36370002 ACTCTTTGCTCCGGCGGCTTGTGTAC--CAGGTGCCTGAACATCAGGCAGGCAAAGTCAC 36370059 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 | || | ||| |||||||| ||||| | ||||| ||||| || || || ||||| |||| Sbjct 36370060 AGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTC 36370119 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | |||| ||||||| ||||||| ||| ||||| ||||| |||| | ||||| | | Sbjct 36370120 CCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGA---TCCCTTCCATAG 36370176 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTG 48330 | ||||| || || || ||||| || | ||||| |||| ||||| || | | Sbjct 36370177 CAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAGGG 36370236 Query 48331 CCCAATCAGCCTTCTTCTTT-ACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 |||| ||||||||||| || |||||||||||||| || |||||||| ||||| | | Sbjct 36370237 CCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTACTCC 36370296 Query 48390 ttttCATTGCTATCTTTAACGTAAGT 48415 | || ||| ||||| || |||||| Sbjct 36370297 CTCTCTTTGGAATCTTCAATGTAAGT 36370322 >seq42 Length=9663327 Score = 201 bits (222), Expect = 2e-46 Identities = 340/490 (69%), Gaps = 7/490 (1%) Strand=Plus/Minus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | ||| Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 || | ||||| || ||||| || || || || || ||||| | ||| ||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 | ||||| ||||| || | || |||| || | ||||||| || || || || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || |||||||| || || ||||||| || | || || || || || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || || |||||||| |||||||| || || || | | || | | || || | | Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGTTGATAATGATTTCTTGT 3435843 Query 48096 ACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 || ||| ||| || || ||| || || | ||||| | || ||||| |||| Sbjct 3435842 ACTCTTTGCTCCGGCGGCTTGTGTAC--CAGGTGCCTGAACATCAGGCAGGCAAAGTCAC 3435785 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 | || | ||| |||||||| ||||| | ||||| ||||| || || || ||||| |||| Sbjct 3435784 AGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTC 3435725 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | ||||| |||||||| ||||||| ||| ||||| ||||| ||||| || ||||| || | Sbjct 3435724 CCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAG 3435665 Query 48274 CCGCAAATGC 48283 | ||||| || Sbjct 3435664 CAGCAAAGGC 3435655 Score = 132 bits (146), Expect = 7e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| || |||||||| || |||||||||||||| || |||||||| Sbjct 3435489 ATCCAACGAAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTG 3435430 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| | | | || ||| |||||||| ||||||||| || | ||||| |||||| Sbjct 3435429 AAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATT 3435370 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || || || || ||||| || || || || || || || ||||| | || ||||| | | Sbjct 3435369 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACC 3435310 Query 48498 TGTACCTC 48505 || || || Sbjct 3435309 TGAACTTC 3435302 Score = 129 bits (142), Expect = 8e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| || |||||||| || |||||||||||||| || |||||||| Sbjct 3436375 ATCCAACGAAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTG 3436316 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| | | | || ||| |||||||| ||||||||| || | ||||| |||||| Sbjct 3436315 AAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATT 3436256 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || || ||||| || || || || || || || ||||| | || ||||| || Sbjct 3436255 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 || ||||| ||||| ||||||||||| ||||| || || | || || ||||||| | Sbjct 3434561 TTTTCATTGACTATGCCATCACTAGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGT 3434502 Query 48588 TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 | |||| || |||| | ||||| | ||||| || || | || || || ||| Sbjct 3434501 CTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCA 3434442 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707 || ||||| || || ||||| ||||| || ||||| | ||| |||||| ||||| || | Sbjct 3434441 GCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGA-T 3434383 Query 48708 GGGAAA 48713 |||||| Sbjct 3434382 GGGAAA 3434377 >seq87 Length=2570995 Score = 194 bits (214), Expect = 2e-44 Identities = 338/490 (69%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 48226 GCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGG 48285 |||| ||||||| | | ||||| ||||| ||||| || |||||||| || ||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 48286 TAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCT 48342 || || ||||| || | || || |||| ||||| | | ||| || |||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 48343 TCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTAT 48402 |||| || |||||||||||||| || |||||||| | ||| | | | || ||| || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 48403 CTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCA 48462 |||||| ||| || | || | ||||| |||||||| || || || ||||| || || | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 48463 TCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAG 48522 | || || || || ||||| || || ||||| | ||| || || | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||| ||| ||||| |||| ||||||||| | |||| || || | || || |||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| | | |||| || |||| | ||||| | ||||| || || | || || | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | ||||| |||| || || ||||| ||||| || ||| | | ||| |||||| ||| | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 48703 GGATTGGGAA 48712 ||| || || Sbjct 1819679 CGATAGGAAA 1819688 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/269 (68%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 |||||| |||||| | |||| ||| ||| || | || || || ||||| | ||| Sbjct 1818824 AAGTCAGTATCTAAGGTAAAAGAATTCTCTGCTGAATTTGATATCACCCCCATCCTCTGA 1818883 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 | || ||||| | ||||| || || || || || |||| | ||| ||||||||||| Sbjct 1818884 CACTCGCCCACTTGCTTCTCAAAGAAGTTTGTCTTCCCTTGTAGTGAAATATTTTCCATG 1818943 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 || ||||| ||||| || | || |||| || | || |||| || | || || Sbjct 1818944 AAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGTGTAAGCCTG 1819003 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 ||||| |||||||| || || ||| ||| || ||||| | || || || Sbjct 1819004 TCTGCCACGAATTCGATGTACTGCTTCGTCAGGGTGCAGTTCATCCTGATGAGCTTCTTA 1819063 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTC 48064 || || |||||||| |||||||| || || Sbjct 1819064 GGCAGGGCCTCCGTGAGAAACTCCTGCTC 1819092 >seq73 Length=3316092 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || || ||||| || |||||||| || || || | ||| Sbjct 2397342 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAT 2397283 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 2397282 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2397223 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2397222 TTTCTTATACCAT 2397210 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 2384997 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2384938 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || || || || ||||| || || | ||| | ||||||| Sbjct 2384937 TAGGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2384878 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 2384877 ATATGCTGTGGTCTTTCAGCC 2384857 >seq7 Length=85103860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 181206 CACTTTTGTGAGAAAAAAGAGGATATCAAGTACGCATGTAAATTCATAAAGGTATATAGA 181265 ||||| ||||||||| ||||| | || |||||| |||| |||||||| || | ||| Sbjct 15914778 CACTTCTGTGAGAAACAAGAGAAGATAAAGTACACATGCAAATTCATCCCAGTCCACAGA 15914719 Query 181266 CCAGATGATGAGAATACATCGA-CATATGTATGTGCTATCAAAGTGGAGAGATGTTGTTG 181324 |||| |||| | || ||||||| ||||| ||| ||||||||||| || || Sbjct 15914718 CCAGGAGATGTG-------CGCTCATATGTGTGTGCACTCAGAGTGGAGAGATTCTGCTG 15914666 Query 181325 TGCTGTGTTC 181334 |||||||||| Sbjct 15914665 TGCTGTGTTC 15914656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694613790914400