Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq26 87.8 7e-13 seq8 87.8 7e-13 seq13 84.2 8e-12 seq46 82.4 3e-11 >seq26 Length=66536344 Score = 87.8 bits (96), Expect = 7e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || |||| |||||| | || | |||||||||||||| | || |||| || Sbjct 25929745 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTGTCT 25929686 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | || ||| | |||| || || || |||||||||||| Sbjct 25929685 TGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 25929626 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 25929625 TATGCCCTGCTTACCTACATGATTGC 25929600 >seq8 Length=88571779 Score = 87.8 bits (96), Expect = 7e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || |||| |||||| | || | |||||||||||||| | || |||| || Sbjct 15943041 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTGTCC 15942982 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | || ||| | |||| || || || |||||||||||| Sbjct 15942981 TGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 15942922 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 15942921 TATGCCCTGCTTACCTACATGATTGC 15942896 >seq13 Length=46045664 Score = 84.2 bits (92), Expect = 8e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || |||| |||||| | || | ||||||||||||||| | | |||| || Sbjct 164378 ATGGCACTGCCTCCTTGCCATGCCCTCTGCCAATTCTATGTAGCGAATAGGGAGCTGTCT 164437 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | | ||| | |||| || || || |||||||||||| Sbjct 164438 TGCCAGCTCTACCAGAGGTCAGGAGTTATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 164497 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 164498 TATGCCCTGCTCACCTACATGATTGC 164523 >seq46 Length=7398006 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || | || |||||| | || | ||||||||||||| |||| || |||| || Sbjct 7346866 ATGGCACTGCCCCCTTGCCATGCCCTCTGTCAATTCTATGTAG-TGAATGGGGAGCTGTC 7346808 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || ||| |||| | || ||| | ||||||| || || |||||||||| Sbjct 7346807 TTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCAT 7346748 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| || |||| || | ||||||| Sbjct 7346747 CTATGCCCTGCTCACCTACATGATTGC 7346721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190081699434350