Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq33 132 1e-25 seq7 127 5e-24 seq2 123 6e-23 seq40 118 2e-21 seq38 118 2e-21 seq17 118 2e-21 seq9 114 3e-20 seq16 87.8 4e-12 >seq33 Length=41749222 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | |||||| || ||||| |||||||||||||| || | ||||| | Sbjct 34672185 AGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 34672244 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| ||||||||||| || | | ||||||||| Sbjct 34672245 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 34672304 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| |||| || || || || || || Sbjct 34672305 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 34672364 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||||||||| | |||||| Sbjct 34672365 ATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq7 Length=85103860 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 11188379 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 11188320 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 11188319 GCAGCCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 11188260 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || ||| |||||| |||| | | |||| ||| ||| || || Sbjct 11188259 CTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTC 11188203 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| | || |||||||| |||| |||||| Sbjct 11188202 GAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 125 bits (138), Expect = 2e-23 Identities = 164/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 11188151 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 11188092 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 11188091 GCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 11188032 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || ||| |||||| |||| | | |||| ||| ||| || || Sbjct 11188031 TTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTC 11187975 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | || ||||| |||| ||||||| Sbjct 11187974 CAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Score = 102 bits (112), Expect = 2e-16 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || |||||||| ||||||||||||| | ||| Sbjct 35411321 CCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGT 35411262 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| || | ||||||||| | | ||| || Sbjct 35411261 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCC 35411202 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 || || || || || || ||||| |||| | | ||| ||| ||| | |||| Sbjct 35411201 CTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTC-CACCTTC- 35411144 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || ||||||| ||||| |||||||| Sbjct 35411143 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTT 35411097 >seq2 Length=98408828 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | | |||| || ||||| |||||||||||||| || | ||||| | Sbjct 61256670 AGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 61256611 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| ||||||||||| || | | ||||||||| Sbjct 61256610 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 61256551 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| |||| || || || || || || Sbjct 61256550 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 61256491 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||||| ||| | |||||| Sbjct 61256490 ATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 || || |||||||| ||||||||||| |||| | || | |||||||| || ||| Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| |||||||||||||| | | ||| || ||||| || || || ||| Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| ||| || || || || || || ||||| || Sbjct 12204269 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTC 12204213 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| |||| ||||||| Sbjct 12204212 AGGGTCTTCACAAAGATCTGCATT 12204189 >seq40 Length=10521589 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || || | ||| |||||||| ||||||||||| |||| || | ||||| || || Sbjct 9790141 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGC 9790082 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || ||||| || || |||||||| ||||| | | ||| |||||||| ||||| || Sbjct 9790081 TACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATC 9790022 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTG 152075 || |||||| |||| | | |||| ||| ||| || |||||||| || || ||| Sbjct 9790021 TTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTG 9789965 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| |||| |||||| || Sbjct 9789964 CCTGTCAGGGTCTTCACAAAGATCTGCATGTT 9789933 >seq38 Length=14253900 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | |||||| || ||||| |||||||||||||| || | ||||| | Sbjct 298692 AGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 298751 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||||||||||| || | | ||||||||| Sbjct 298752 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 298811 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| |||| || || || || | || Sbjct 298812 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTG 298871 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||| | || ||||| ||||| | |||||| Sbjct 298872 ATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq17 Length=65020687 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | |||||| | ||||| |||||||||||||| || | ||||| | Sbjct 35302167 AGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 35302226 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| ||||||||||| || | | ||||||||| Sbjct 35302227 TCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 35302286 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||||| | |||| |||| || || || || || || Sbjct 35302287 TTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTG 35302346 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||||||||| | |||||| Sbjct 35302347 ATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq9 Length=86001432 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | |||||| || ||||| |||||||||||||| || | ||||| | Sbjct 39797608 AGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 39797549 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||||||||||| || | | ||||||||| Sbjct 39797548 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 39797489 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || || || |||||| | |||| |||| || || || || || | Sbjct 39797488 TTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGG 39797429 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||| | || ||||||||||| | |||||| Sbjct 39797428 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq16 Length=69618829 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||| ||| || ||||| |||||||||||||| || | ||||| | Sbjct 24326399 AGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 24326458 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 | |||||| | || || |||||||| ||||||||||| || | | ||||||||| Sbjct 24326459 CTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 24326518 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTA 152037 || || || || || |||||| | |||| Sbjct 24326519 TTATCCTGGATCTTGGCCTTGACATTTTCTA 24326549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153727147610785