Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq33 150 1e-31 seq17 141 7e-29 seq38 136 3e-27 seq9 136 3e-27 seq2 136 3e-27 seq7 114 9e-21 seq40 93.3 3e-14 seq16 91.5 1e-13 >seq33 Length=41749222 Score = 150 bits (166), Expect = 1e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||||| ||||| ||| |||||||||||||||||| || | | || Sbjct 34672185 AGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 34672244 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| | ||||||||| | ||| | |||||| Sbjct 34672245 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 34672304 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 34672305 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 34672364 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| |||||||||||||| || ||||| Sbjct 34672365 ATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||||| ||||| || |||||||||||||||||| || | | || Sbjct 35302167 AGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 35302226 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 || || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 35302227 TCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 35302286 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| || | || |||| ||||| | | ||| ||||| | ||| Sbjct 35302287 TTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTG 35302346 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || |||||||||||||| || ||||| Sbjct 35302347 ATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| ||||| ||||| ||| |||||||||||||||||| || | | || Sbjct 298692 AGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 298751 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 298752 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 298811 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 298812 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTG 298871 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||| | |||||||| ||||| || ||||| Sbjct 298872 ATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq9 Length=86001432 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||||| ||||| ||| |||||||||||||||||| || | | || Sbjct 39797608 AGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 39797549 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 39797548 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 39797489 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| ||| | || |||| ||||| | || ||| ||||| | || Sbjct 39797488 TTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGG 39797429 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||| | |||||||||||||| || ||||| Sbjct 39797428 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq2 Length=98408828 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||||| |||| ||| |||||||||||||||||| || | | || Sbjct 61256670 AGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 61256611 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| | ||||||||| | ||| | |||||| Sbjct 61256610 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 61256551 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 61256550 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 61256491 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||| ||| || ||||| Sbjct 61256490 ATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 44138 AGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTC 44197 || ||| ||| || ||||||||||| |||| || ||| | || |||||||| || Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||||| | |||||| || | || | ||| ||||| ||| ||||| ||| Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTT-TGC 12204271 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | ||| | |||||||| || || ||||||| || || ||||| || || || Sbjct 12204270 CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAG 12204211 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| ||||| Sbjct 12204210 GGTCTTCACAAAGATCTGCAT 12204190 >seq7 Length=85103860 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 11188160 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 11188101 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||||||| || || |||||||||| | |||||| || | Sbjct 11188100 GGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 11188041 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | | ||| | |||||||| || | Sbjct 11188040 GGGGATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCT 11187982 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || | ||| ||||| ||||| ||||| Sbjct 11187981 CGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||||||||||| ||| ||| | || ||| Sbjct 35411308 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCTTCC 35411249 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || || || ||| Sbjct 35411248 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 35411189 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||| || ||||||| || || || ||||| Sbjct 35411188 ATCTTGGCCTTGAC-GTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTT 35411130 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||||| |||||||||||| Sbjct 35411129 GCCAGTCAGGGTCTTCATGAAGATTTGCAT 35411100 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 11188388 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 11188329 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || ||||||| || || |||||||||| | |||||| || | Sbjct 11188328 GGACAGGGTGCAGCCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 11188269 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | ||| | |||||||| || | Sbjct 11188268 GGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCT 11188210 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || | ||||||||||| ||||| ||||| Sbjct 11188209 CGACCTCGAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 >seq40 Length=10521589 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 || |||||| | ||| ||| || ||||||||||| |||| || | | | | | || | Sbjct 9790145 CATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTC-CATCCT 9790087 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||| ||| |||||||| |||| | ||| || || | || | |||||||| || Sbjct 9790086 CCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTT 9790027 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | | |||||||| || || ||||| | || || |||| Sbjct 9790026 GGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 9789967 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || ||||||||||| ||||| |||||| || Sbjct 9789966 TGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 9789932 >seq16 Length=69618829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 |||||||||||||| | ||| ||| |||||||||||||||||| || | | | | | Sbjct 24326399 AGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 24326458 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 || || |||| |||||| || || ||||||| | ||||||||| | ||| | ||||| Sbjct 24326459 CT-ATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 24326517 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277 ||| ||| ||||| ||| | || |||| ||||| Sbjct 24326518 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTC 24326556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359962605928695