Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5 156 6e-33 seq3 129 8e-25 >seq5 Length=88288230 Score = 156 bits (172), Expect = 6e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| ||||||||||| | || | |||| ||| Sbjct 40225213 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 40225154 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| |||||||||||| ||| || |||||| Sbjct 40225153 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 40225094 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 40225093 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 40225034 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| | | | |||||||||| || |||| | Sbjct 40225033 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 40224974 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || ||||| || ||||| ||||||| Sbjct 40224973 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 40224928 Score = 120 bits (132), Expect = 4e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || | || || ||| || ||||| || ||||| || ||||| ||||| Sbjct 40223676 GTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCTGTTTGAGCACATCACACACT 40223617 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 |||||||| |||| | |||||| ||||| |||||||| || ||||| || || ||||| Sbjct 40223616 CTGTTGTGCTCCCGCAACCAGATGGTGGCATACATCATCAGACCAGGCACTAGACCAAAG 40223557 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | | | | || || | || || |||||||| | Sbjct 40223556 ACCTCCTGCCCCACTGCAAACTGTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCT 40223497 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||| ||||||||||| ||| ||||||| || || |||| Sbjct 40223496 ACCTGGGTGTCTTTGACCGTGGGAGGATACACCTCTCCACCAAT 40223453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 40222326 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 40222267 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || || ||||| | || | ||| || ||||| Sbjct 40222266 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 40222207 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | |||| |||||| ||| |||| ||| Sbjct 40222206 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 40222168 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9909 CACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 9968 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 40221601 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 40221542 Query 9969 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGG 10028 | |||||||| |||||||| ||||||||| || ||| | |||| | |||||| | | Sbjct 40221541 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCATGTTGTAAGTTG 40221482 Query 10029 GAGGGCTGTCAATCAAATCGGATCT 10053 | || ||||||||||||| ||||| Sbjct 40221481 GCGGACTGTCAATCAAATGTGATCT 40221457 >seq3 Length=92994323 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 40183809 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 40183868 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 40183869 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 40183928 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 40183929 GGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCCGGGTAGAACTCTAAGGCATCGATGTC 40183988 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || | || || || |||||||| ||||||| Sbjct 40183989 ACCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 40184032 Score = 93.3 bits (102), Expect = 6e-14 Identities = 121/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| ||| || || Sbjct 40191123 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 40191182 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT- 9350 || | ||||| | |||||||| | ||||| || | |||||||| |||| |||| Sbjct 40191183 TCCTCCTTCAGCAGGTCGCACACGCGATTGTGCTCACGTAGCCAGATCGTGG---ACATG 40191239 Query 9351 --CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||| ||||| || | || ||||| |||| || || ||||||| Sbjct 40191240 ACCATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 40191285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716820032318400