Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33 158 3e-33 seq17 154 4e-32 seq7 152 1e-31 seq2 138 3e-27 seq9 136 1e-26 seq40 122 2e-22 seq54 96.9 8e-15 >seq33 Length=41749222 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || |||||||| ||||| |||||||| ||| ||| ||| Sbjct 34672399 CAGATTTTCGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 34672340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| ||||| || ||||| Sbjct 34672339 ACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 34672280 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| |||||||| | ||| | | || || ||| || Sbjct 34672279 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATC 34672220 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| | || |||||||| Sbjct 34672219 CAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACT 34672185 >seq17 Length=65020687 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||||||||| ||||| |||||||| ||| ||| ||| Sbjct 35302381 CAGATTTTCGTGAAGACCCTTACAGGAAAAACCATCACGCTCGAGGTTGAACTCTCGGAC 35302322 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||| || |||||||| ||||| || ||||| Sbjct 35302321 ACTATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 35302262 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| ||||||| | ||| | | || || ||| || Sbjct 35302261 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCGTACTTTGTCTGACTACAACATC 35302202 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || | || ||| | || |||||||| Sbjct 35302201 CAAAAGGAGTCCATCCTTCATTTGGTGTTGAGACT 35302167 >seq7 Length=85103860 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || || || |||||||| ||||| || || ||| Sbjct 11187933 CAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGA--GCCCAGTG 11187990 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| ||||| ||||| || ||||||| Sbjct 11187991 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 11188050 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || |||| || ||| Sbjct 11188051 AGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 11188110 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 11188111 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAG 11188150 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || | ||| || || |||||||||||||| | ||| || | Sbjct 11188161 CAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 11188218 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 11188219 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 11188278 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || ||| |||| |||||||| | || || |||| || ||| Sbjct 11188279 AGAGGCTGATCTTTGCAGGCAAAGAGCTGGAAGATGGCTGCACCCTGTCCGACTACAACA 11188338 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 11188339 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAG 11188378 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||| |||| || || || || || || |||||||| ||||||| Sbjct 35411097 AAAATGC---AAATCTTCATGAAGACCCTGACTGGCAAGACCATCACCCTGAAGGTGGA- 35411152 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 35411153 -GCCCAGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCC 35411211 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| ||||| ||||| || || || ||||| |||||||| | ||||| Sbjct 35411212 CTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTTTA 35411271 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||| |||| ||||| || || ||||| || || Sbjct 35411272 ATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 35411308 Score = 125 bits (138), Expect = 2e-23 Identities = 120/151 (79%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| | ||||| |||| |||||||| || || || || || || |||||||| ||| Sbjct 36033365 AAGGTCAGAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAG 36033309 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| ||||||||||||||||||| ||||| ||||||||||| || | Sbjct 36033308 GTGGA--GCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCA 36033251 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 |||| || |||||||| ||||| ||||| || Sbjct 36033250 TCCCCCCTGACCAGCAGCGACTCATCTTTGC 36033220 >seq2 Length=98408828 Score = 138 bits (152), Expect = 3e-27 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 12204193 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGTG 12204250 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 12204251 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGC 12204310 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || |||| || ||| Sbjct 12204311 AGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 12204370 Query 178102 TCCAAAAAGAATCAACACT 178120 |||| ||||| || || || Sbjct 12204371 TCCAGAAAGAGTCCACCCT 12204389 >seq9 Length=86001432 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || ||||| ||| | |||||||| ||| ||| ||| Sbjct 39797394 CAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCCCGCTCGAGGTTGAACCCTCGGAC 39797453 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| |||| || |||||||| ||||| || ||||| Sbjct 39797454 ACTATAGAAAATGTCAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCCTGATCAGCAG 39797513 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | ||| | | || || ||| || Sbjct 39797514 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATC 39797573 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| | || |||||||| Sbjct 39797574 CAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACT 39797608 >seq40 Length=10521589 Score = 122 bits (134), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || ||||| || ||||| || || ||| Sbjct 9789939 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 9789996 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| | Sbjct 9789997 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCATC 9790056 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || ||||| || |||| || |||||| |||| | |||| || ||| Sbjct 9790057 AGAGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTACAACA 9790116 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| ||||| || || |||| || Sbjct 9790117 TCCAGAAAGAGTCCACTTTGCACCT 9790141 >seq54 Length=5595057 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/211 (72%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 177923 CCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG- 177981 |||||| || |||||||| || || | | | | |||||||| |||| || || ||| Sbjct 4729431 CCAAATCTTGGTGAAAACCCTGACCAGCAGACC-ATCACCCTGAAGGTAGA--GCACAGT 4729375 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||| ||||| ||||| | ||||||||| || | | |||| ||||| Sbjct 4729374 GACACCATCGAGAATGTCAAGACCAAGATCCGGGACAAAGAGGGCACCTCTCCACACCAG 4729315 Query 178041 CAACGACTTATCTTCGCCGGAAAA--CAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 || | ||| ||||| | ||| | |||| |||||||| |||||| | | || | Sbjct 4729314 CAGCAACTCATCTTAG--AGAACAGGTAGCTGGAAGATGGCCACACTCTTTCTAAATACA 4729257 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || |||| ||||| || || ||| | || || Sbjct 4729256 ACATCCAGAAAGAGTCCACCCTGTACCTGGT 4729226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203633496523990