Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq40 102 8e-17 seq33 98.7 9e-16 seq17 93.3 4e-14 seq38 91.5 1e-13 seq2 89.7 5e-13 >seq7 Length=85103860 Score = 104 bits (114), Expect = 2e-17 Identities = 169/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| ||| ||| ||||| ||||| || | Sbjct 35411330 ACAGCCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATT 35411271 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||| ||||| | || || ||||||||||| || || || || ||||| ||||| | Sbjct 35411270 AAAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 35411211 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCG 41807 ||| | || ||| || ||| ||| || ||| |||| | || ||||| || | Sbjct 35411210 GGGGATGCCCTCTTTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGG 35411155 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTAT 41867 |||||||| || || || || || || ||||| ||||| | ||| || ||||| || | Sbjct 35411154 GCTCCACCTTCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTTGT 35411095 Query 41868 C 41868 | Sbjct 35411094 C 35411094 >seq40 Length=10521589 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||| | || ||| |||| ||| ||| ||||| ||||| |||||||| |||| | Sbjct 9790153 AGACAAAGCATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCT 9790094 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||| ||||||||| |||||||| | ||| ||||| | || | || ||| Sbjct 9790093 CCATCCTCCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCC 9790034 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||| ||||| | || Sbjct 9790033 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTG 9789974 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 9789973 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 9789933 >seq33 Length=41749222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||| || ||| |||||| || ||||| ||||| || | || || | || Sbjct 34672191 AACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCT 34672250 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||| ||||| ||||| | ||| || || | |||| | ||||| ||| Sbjct 34672251 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 34672310 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || ||| Sbjct 34672311 TGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 34672370 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| |||||||||||||| Sbjct 34672371 TTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||| || || |||||| || ||||| ||||| || | || || || || Sbjct 35302173 AACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATCT 35302232 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||| || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 35302233 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 35302292 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA-CTCCACCTCCACCGTTATCG 41828 || | || |||| || | | |||||| | || || ||||| | ||| || | Sbjct 35302293 -TGGATCTTGGCTTTGACATTTTCTATAGTGTC-CGAGAGTTCAACCTCGAGCGTGATGG 35302350 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| |||||||||||||| Sbjct 35302351 TTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||| || ||| |||||| || ||||| ||||| || | || || | || || Sbjct 298700 CACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTC 298759 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 298760 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 298819 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||| | | |||||| | || ||||| | ||| || ||||| Sbjct 298820 GATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGTTTT 298879 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || |||||||||||||||||||| Sbjct 298880 CCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq2 Length=98408828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| | | || ||| |||||| || ||||| ||||| || | || || | || Sbjct 61256664 AACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCT 61256605 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||| ||||| ||||| | ||| || || | |||| | ||||| ||| Sbjct 61256604 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 61256545 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || ||| Sbjct 61256544 TGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 61256485 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| | |||||||||||| Sbjct 61256484 TTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462267391302000