Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 3e-13 seq6 91.5 3e-13 seq5 91.5 3e-13 seq16 89.7 1e-12 seq4 89.7 1e-12 >seq11 Length=89975685 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 19386282 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19386341 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 19386342 CCCCACGTTGGGC 19386354 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 19373297 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 19373238 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19373237 CCCACGTTGGGC 19373226 >seq6 Length=112758220 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 19273976 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19274035 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 19274036 CCCCACGTTGGGC 19274048 >seq5 Length=114734182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 233/352 (66%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 281729 AGGGTTCAGTTTCGTGAAGAT--ATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGC 281786 |||| | || | || ||||| |||||| | ||| || ||| || ||||| |||||| Sbjct 107221291 AGGGCTTAGCATTGTAAAGATGTATACCTAGGACTAGCTGAGTCCTTGCCACCATGCAGC 107221350 Query 281787 CTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCC 281846 || | ||||||||||| ||| || ||| | |||||||| || || ||| | Sbjct 107221351 CTGGTTCCAAACTGACCGATGGGCTGTAAAAGGTTCAAATTATTGCTGCCCACAAAATTC 107221410 Query 281847 TGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGT 281906 ||||||| |||| || ||| | || || | |||||| |||||||| | | | Sbjct 107221411 TGAGCCAAATTGATAATGGTCATCATCAGTGACATCTCACCATGGTGATAAGAGGACATT 107221470 Query 281907 TCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCT--GATGTCAAGTTGCGTTTGA 281964 ||||| || | ||| ||||| || |||||||| ||| ||||| || ||||||| Sbjct 107221471 TCGGCCACTGACCCAGCTAACTGGGCAACCTTCACTTCTCGCTTGTCA--TTCCGTTTGA 107221528 Query 281965 AAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGC 282024 || | | || || |||| ||| || || ||||| || || | || || || Sbjct 107221529 AACAAGTAAACAAAACCTTTCTCTGACCTGGTTTCAAACCGTCTACCATGGATGGGATAG 107221588 Query 282025 TGCGTTCCAGGTCATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTC 282076 | ||| ||| | ||||| | || |||||||||| |||||||| Sbjct 107221589 ACCTTTCGTTATCAGAGTTGGAGAAGAGGATGAGTTCCTTGTTTATGAAGTC 107221640 >seq16 Length=152576986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 90540582 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 90540523 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 90540522 CCCACGTTGGGC 90540511 >seq4 Length=117747451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 43821315 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 43821256 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43821255 CCCACGTTGGGC 43821244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057781144244060