Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2669 277 2e-69 seq18 165 8e-36 seq6 111 2e-19 seq5 93.3 4e-14 >seq2669 Length=49141 Score = 277 bits (306), Expect = 2e-69 Identities = 595/882 (67%), Gaps = 8/882 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || || || || || ||||| || || || ||||| Sbjct 22132 ACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGT 22191 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||| |||||| | ||||| ||||| || |||||||| || | | | |||| Sbjct 22192 GAGATATTTTCCATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAA--AACCCA 22249 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | || || || ||||| || ||||| || ||| || ||| |||| Sbjct 22250 GCTCCAGCATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCA 22309 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 |||| || || || || | || |||| | || |||||||| ||| || Sbjct 22310 TTCCGATGAGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG--TT 22367 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 | | || || | | | | ||| | || | ||| || || || ||||||| Sbjct 22368 GGTGATTATCTCTCTGACC-CTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCA 22426 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || || || || ||||| ||||||||||| || ||||| || || |||||||| | Sbjct 22427 GGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAA 22486 Query 17022 ACCCGGGCATCTTTCCTC-GTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || |||||| || | ||||||| | ||| ||||||| || || || || |||||| Sbjct 22487 GGCCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAG 22546 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | ||||| | ||||| || ||||||| Sbjct 22547 AAGATTCCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCC 22606 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | | |||| | |||| || || || | ||| | ||| ||||||||| || || Sbjct 22607 CCAGTCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCA 22666 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || || | | ||| |||||| | || | || || || || || || | |||||| Sbjct 22667 TTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTAC 22726 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 ||||| ||||||||||| |||||||| || || || || || || || ||||| || | Sbjct 22727 ATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTA 22786 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 | ||||||||| | ||||| ||| | | || || || || ||||| || ||||| Sbjct 22787 ACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCT 22846 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440 || || || |||| | ||| || |||| | | || || ||| | ||| | |||| Sbjct 22847 GCAAAGAAAGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAG 22906 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 | || | ||| ||||| | ||||| || |||| |||||||| ||| | || || Sbjct 22907 TGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTC 22966 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACA 17542 || ||||| | ||| ||||||| ||| | ||||| || ||| Sbjct 22967 TTGTACATCTGCCAGATATCATGGTACTCGATGGGAAAGACA 23008 >seq18 Length=146158383 Score = 165 bits (182), Expect = 8e-36 Identities = 402/601 (67%), Gaps = 15/601 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| | | || || || ||||| |||||||||||||| ||||| Sbjct 66703334 AGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 66703393 Query 17006 TCGTTAG-AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 || || | ||||||| | || |||||| ||| ||||||| | ||| ||||||| || Sbjct 66703394 TCATTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGC 66703453 Query 17065 GAACGACCCAG-AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGT 17123 || || |||| ||||||| || | || || | ||||| || | | |||||| || | Sbjct 66703454 AAAAGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCAT 66703513 Query 17124 ACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA-A 17182 | || || ||||||| | | |||| | | |||| || || || | || | Sbjct 66703514 ATGTAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT--------CACA 66703565 Query 17183 TCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| ||||| || || || || | | ||| |||| | | || | || || || Sbjct 66703566 GGCATTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTG 66703625 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATG-TTCTCCATGGCTATCTGAAATCCGTA 17301 || || || || || ||||||| ||||||||| |||| |||| | | || || || || Sbjct 66703626 TCAATAAGGAGACTATACATTTTAGAGTGTATGCTTCT-CATGCCAGTTTGGAAGCCATA 66703684 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361 ||| || | || || | | ||||| ||| | ||||| ||| | | ||| | || Sbjct 66703685 AAA-CAGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATT 66703743 Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 | ||||| || || || || || || |||| || || || |||| | | || || Sbjct 66703744 GAGTATGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATC 66703803 Query 17422 CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 ||| | | | | ||||| | | | ||| ||||| | ||||| || || | ||||| Sbjct 66703804 GGGTTTCACAGCTTCCCAGTGC-TGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCA 66703862 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATAC 17541 ||| | ||| | || || | ||||| | ||| ||||||| ||| | ||||| || || Sbjct 66703863 AAAGGTGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 66703922 Query 17542 A 17542 | Sbjct 66703923 A 66703923 >seq6 Length=112758220 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| || || || || || ||||| |||||||||||||| ||||| Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||| ||| | || |||||| ||| |||||||| | ||| ||| | | || Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 || || || |||||||| || || || |||| ||||| || Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGC 9090605 >seq5 Length=114734182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| ||||| || || |||||||| | || |||||| || ||||||| Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || |||| ||||| | Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 17106 C 17106 | Sbjct 21262717 C 21262717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525144010160