Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2669 282 4e-71 seq18 196 5e-45 seq6 105 7e-18 seq8 96.9 4e-15 seq5 89.7 5e-13 >seq2669 Length=49141 Score = 282 bits (312), Expect = 4e-71 Identities = 597/883 (68%), Gaps = 12/883 (1%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || || || || |||||||| || ||||| |||| Sbjct 22132 ACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGT 22191 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||||||||| | ||||| ||||| || |||||||| | | | | |||| Sbjct 22192 GAGATATTTTCCATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAA--AACCCA 22249 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | || || || ||||| || ||||| || ||| || |||||| | Sbjct 22250 GCTCCAGCATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCA 22309 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 |||| || || || || | || | | | || | || |||||| ||| | Sbjct 22310 TTCCGATGAGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---T 22366 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 | || || || || | | || | || | || ||||| || ||||| | Sbjct 22367 TGGTGATTATCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCA 22426 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | || || ||||| || |||| || |||||||| || ||||| || |||||||| || | Sbjct 22427 GGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAA 22486 Query 16260 ACCCTGGCATTTTTCCTC-GTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 || ||||| || | ||||||| | ||||||||||| ||||| || || |||||| Sbjct 22487 GGCCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAG 22546 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || |||| ||||| || | | ||||| | |||||||| ||||| | Sbjct 22547 AAGATTCCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCC 22606 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | | |||| | |||| || || || | || | |||| ||||||||| || || Sbjct 22607 CCAGTCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCA 22666 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 || || | | ||| |||||| ||| | || || || ||||| || ||||||| Sbjct 22667 TTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTAC 22726 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| ||||||||||| || ||||| || || || |||||||| || || ||||| | Sbjct 22727 ATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTA 22786 Query 16559 ATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 | ||| ||||| | |||||| ||| ||| ||||||||| || || || ||||| || Sbjct 22787 ACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCT 22846 Query 16619 GCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 ||||| || ||| || ||| | | || |||| | | || || | | | ||| | || Sbjct 22847 GCAAAGAAAGCCAGAACATGAGAT--ATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCC 22904 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | | ||| ||||| | ||||| || || | ||||||||| ||| | || | Sbjct 22905 AGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTT 22964 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 | || ||||| | ||| ||||||| ||| | |||||||| || Sbjct 22965 TCTTGTACATCTGCCAGATATCATGGTACTCGATGGGAAAGAC 23007 >seq18 Length=146158383 Score = 196 bits (216), Expect = 5e-45 Identities = 408/599 (68%), Gaps = 13/599 (2%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || | | ||||| || |||| || ||||||||||| ||||| Sbjct 66703334 AGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 66703393 Query 16244 TCGTTGGAAAAA-GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302 || ||||||||| || | || ||||| ||| ||||||| | ||||||||||| || Sbjct 66703394 TCATTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGC 66703453 Query 16303 AAATGACCCCG-AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGT 16361 ||| || || | ||||||| || | || || | ||||| || | | |||||| || | Sbjct 66703454 AAAAGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCAT 66703513 Query 16362 ACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 | ||||| ||||| | | | |||| | | |||| || || || | || | Sbjct 66703514 ATGTAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CAC-AG 66703566 Query 16422 CCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 ||| ||||| || || || || | | ||| |||| | ||| | || || || | Sbjct 66703567 GCATTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGT 66703626 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATG-TTCTCTATGGCTATCTGAAATCCATAG 16540 |||| || | ||| ||||||| ||||||||| ||||| ||| | | || || ||||| Sbjct 66703627 CAATAAGGAGACTATACATTTTAGAGTGTATGCTTCTC-ATGCCAGTTTGGAAGCCATA- 66703684 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTC 16600 || || | |||||| | | ||| | ||| | |||||| ||| ||| ||| |||| Sbjct 66703685 AAACAGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTG 66703744 Query 16601 ACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA 16660 | || || |||||||| ||||| || |||| ||||| || |||| | | || || Sbjct 66703745 AGTATGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCG 66703804 Query 16661 GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAA 16720 | | | | | | ||| | | | ||| ||||| | ||||| || || | |||||| Sbjct 66703805 GGTTTCACAGCTTCCCAGT-GCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAA 66703863 Query 16721 AAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 ||| | ||| | || || | ||||| | ||| ||||||| ||| | |||||||| || Sbjct 66703864 AAGGTGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 66703922 >seq6 Length=112758220 Score = 105 bits (116), Expect = 7e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || |||| || ||||||||||| ||||| Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||||| || | || ||||| ||| |||||||| | ||||||| | | ||| Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 || || || |||||||| || || || || | ||||| || Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGC 9090605 >seq8 Length=97450195 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| ||||| || |||||||| | || ||||| |||| |||| Sbjct 32799291 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 32799350 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| ||||||||||| || || ||||| || || || |||| ||||| | Sbjct 32799351 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32799410 Query 16344 C 16344 | Sbjct 32799411 C 32799411 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || || |||||||||||||| |||||||| | ||||| ||| |||||| Sbjct 32806321 ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAGAATCTGA 32806380 Query 16532 AATCCATAGAAGCATCGAGCCTC 16554 || ||||||||||| |||||||| Sbjct 32806381 AAGCCATAGAAGCAGCGAGCCTC 32806403 >seq5 Length=114734182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| ||||| || |||||||| || | || ||||| || |||||||| Sbjct 21262835 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 21262776 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 21262775 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 21262717 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | |||||||||||| ||||||||||| || ||||| || || Sbjct 21261578 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGG 21261519 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || || ||||| | | ||| ||||| | |||||| ||| || Sbjct 21261518 AAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACC 21261462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394186345840