Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq24 122 6e-23 seq1 122 6e-23 seq6 116 3e-21 >seq24 Length=120003353 Score = 122 bits (134), Expect = 6e-23 Identities = 173/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 |||| || | || || ||||||| ||||| | | |||| |||||||||| |||| || Sbjct 27351635 TCATCACTCCCTTGTAAACAGAACCACCTCGCACTGTCCAAACCATGTCTAACTTATCTG 27351694 Query 4214 CTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAG 4273 |||||||||| | ||| || || |||| ||| |||| ||| || || | |||||||| Sbjct 27351695 CTAATTCTGGTTTTTCAGTGCGTCTTAAGACATTGTCTAGACTTTTGGCAAGAAAATGAG 27351754 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAG 4333 ||| ||||| | ||| ||||| | | || ||| | |||||||| | || |||| Sbjct 27351755 CTCCTTGTGGTGGTTCCCCGAGTTCTCTACAGAAAACTATGTTAATTCTTTCCTTCAAAG 27351814 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 ||||||||| | || |||| || || ||| ||||| |||||| | | ||||| Sbjct 27351815 CTTCATTCTTCTCAAGCATGGAGAGCC-AGGCTTCCTACCCCAAATCACCATGTCCTGTT 27351873 Query 4394 TA 4395 || Sbjct 27351874 TA 27351875 >seq1 Length=185492789 Score = 122 bits (134), Expect = 6e-23 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 26935 TTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCT 26994 ||||| || | | | | ||||| | | |||||| |||||||| ||| ||| ||||||| Sbjct 16276319 TTTAGGCTGCCTGGCGGACAATCGAGGCAACGCAGGTGCAGCCCACACCCACCAGCATCT 16276260 Query 26995 TCTCTAGCCTAAA--TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTC 27052 | || | || || |||| |||||| | | || | | || || || ||||| Sbjct 16276259 TTTCCACCCGGAAAGTGAAG--GGGCAGCTCTCAGGCTCCCTCTTCAGGACCAGGATCTC 16276202 Query 27053 TTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCC 27112 ||| ||||| | || || |||||||||| ||| | || || || || || ||||| | Sbjct 16276201 TTGCTGGATGAGAACAGAATTCATGTGGTGGTCCAGCTTTCCCTCCGCGTTGACACAGCG 16276142 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| |||||||| |||||||||||||||||||| | ||||||||||| Sbjct 16276141 CTGGTGGCGGCACTGAGCTTCCCAGATCACAGAGGGATATCTATCGGGGTCTTCATTGCG 16276082 >seq6 Length=112758220 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 86114882 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 86114823 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 86114822 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 86114774 Score = 114 bits (126), Expect = 9e-21 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 || |||||||| ||||| | || ||| ||||||||||||||| |||| ||||| || ||| Sbjct 86122440 TAAACAGAACTGCCTCCGACTACCCAAACCATGTCTACTTTACTTGCCAATTCCGGTTGT 86122381 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || ||||| |||| |||||||| ||||| || || | ||||||||||| ||||| Sbjct 86122380 TCAATAAGTCTTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGG 86122325 Score = 102 bits (112), Expect = 6e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 86125059 AAGTTTATATTTCCCCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 86125000 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| | || | || ||| | | |||| ||||| || Sbjct 86124999 GATCCTTGTCACAAAGAGTCTGAGGTGGCCTGGTTGATTCATGGCTTCCTT 86124949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237278507662