Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2669 387 2e-102 seq18 251 8e-62 seq6 141 1e-28 seq22 122 1e-22 seq5 114 2e-20 seq8 107 2e-18 >seq2669 Length=49141 Score = 387 bits (428), Expect = 2e-102 Identities = 646/926 (70%), Gaps = 12/926 (1%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 23845 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || || || || || || || || || || || || || ||||||| ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 |||| | || | ||||| || | | || | ||||| |||| || || | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 || || || |||||||| ||||| ||||||| ||||||||||| || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || | ||| | | || || || || || || || || || || || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAAC---GTTGGTGATTATCTC 22379 Query 24086 TCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 ||| || | | || | || | | | | | | || || ||||||| || || || | Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 22438 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | ||||||| |||||||||||||||||| | || |||||||| || || || ||||| | Sbjct 22439 CACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCA 22498 Query 24205 GGCCACGCTTT-TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 | || | ||| || ||||| ||||| || ||||| || || |||||||| ||||||||| Sbjct 22499 GCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCT 22558 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 24320 || || |||||||| | || | ||||||||| | | | |||| |||| Sbjct 22559 ACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGC 22618 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || |||||||| || ||||||||||| || || |||||||| |||||||| Sbjct 22619 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATAT 22678 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | |||| || |||||||| || || ||||| | |||| |||||||| || || Sbjct 22679 TCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGT 22738 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| ||||| ||||| || || |||||||| | ||||| |||| || |||||| Sbjct 22739 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 22798 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | |||||| || | || || ||||| ||||| || ||||| |||||||| || ||| Sbjct 22799 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCC 22858 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 24620 | ||||| |||||||| | | || || ||| | || | ||| | | ||||| Sbjct 22859 AGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCC 22918 Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | ||||| || || | |||||||| || ||||| || || || ||||| | | Sbjct 22919 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGC 22978 Query 24681 CAGATGTCATGATATTGAATTGGAAA 24706 ||||| ||||| || | || ||||| Sbjct 22979 CAGATATCATGGTACTCGATGGGAAA 23004 >seq18 Length=146158383 Score = 251 bits (278), Expect = 8e-62 Identities = 415/592 (70%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||||| | | || || ||||||| |||||||||||| ||||| | || Sbjct 66703337 TGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 66703396 Query 24180 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 |||||||| || || || ||||| || || | || || ||||| ||||| || ||||| Sbjct 66703397 TTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAA 66703456 Query 24239 TGATCCAGAAAA-GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-- 24295 || |||||||| ||| ||| ||||||| || |||||||| | || || |||| |||| Sbjct 66703457 AGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATG 66703516 Query 24296 -ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 24354 | | | |||| |||| | ||||| || ||||||| |||| |||| Sbjct 66703517 TAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCA 66703569 Query 24355 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 24414 |||| || |||||||| || ||||| | | |||| || | |||||||| || || |||| Sbjct 66703570 TTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAA 66703629 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | | ||||||||||||| || || ||| || ||| | |||| || || || |||| Sbjct 66703630 TAAGGAGACTATACATTTTAGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATA-AAAC 66703688 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 | | |||||| |||| || | |||| | |||||| || | || ||| |||| | || Sbjct 66703689 AGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTA 66703748 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || ||||| |||||||| || |||| | || |||||||| | | || || ||| Sbjct 66703749 TGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGT- 66703807 Query 24595 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 24654 || |||| | ||||||| || || | ||||| || || | |||||||| | Sbjct 66703808 TTCACAGCTTCCCAGTGCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGG 66703867 Query 24655 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 ||||| || || | ||||| | |||||| ||||| || | || ||||| Sbjct 66703868 TGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGATGGGAAA 66703919 >seq6 Length=112758220 Score = 141 bits (156), Expect = 1e-28 Identities = 199/281 (71%), Gaps = 19/281 (7%) Strand=Plus/Minus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||||| || || || || ||||||| |||||||||||| ||||| | || Sbjct 9090762 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 9090703 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||||||| || || || ||||| || || || || || ||||| ||| | || ||||| Sbjct 9090702 TTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCAAAA 9090643 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CC 24298 || || |||||||| ||||||||||| | |||||||| | || ||||| ||| || || Sbjct 9090642 GAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAACTCTTTGTCCCCAATCC 9090583 Query 24299 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 |||| |||||| || ||| ||| || |||||||| || || Sbjct 9090582 AGCGC-----------------AAAGCCCAGTCAGCCGCCTTCTTCACACAAGG-ATGGT 9090541 Query 24359 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTT 24399 || |||||||| |||| ||| | | |||| || ||||| Sbjct 9090540 TTCAATAGCATTGAAGAAATATTCTCTTTCCTTGGGATCTT 9090500 >seq22 Length=147524369 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 105169247 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 105169188 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 105169187 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 105169128 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 105169127 CTGTTTCTTATACCATA 105169111 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| |||| || || || || || | || || ||||| ||||| || || || | Sbjct 105166029 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGCTCACAGCTGGCTTCCAGG 105165970 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 105165969 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 105165910 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 105165909 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 105165850 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 105165849 CGATGGCGTTTATTTGA 105165833 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || ||||| || || || || | Sbjct 105151169 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCTATCCTTGCTGCCAGGA 105151110 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || ||| | || || | ||| ||||||| Sbjct 105151109 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 105151050 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 105151049 GTTCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCAT 105151004 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||||| || || |||||||| || ||||||||||| ||| Sbjct 105156131 GTCCCGGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 105156072 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || || || | || ||||| || ||||| || || | || | ||| ||| Sbjct 105156071 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 105156012 Query 54545 ATGTGCTGAGGTCTTTCA 54562 |||||||| ||||||||| Sbjct 105156011 ATGTGCTGTGGTCTTTCA 105155994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||| || || || || || ||||| || | | |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 >seq5 Length=114734182 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || || |||||||| ||||||||||| || ||||||| Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 21262717 CCACAACGCGTTCTCC 21262702 >seq8 Length=97450195 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | |||||||||||||| |||||||||||||| || || |||||||| Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 32799411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698133153760