Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq24 208 9e-49 seq3 96.9 4e-15 >seq24 Length=120003353 Score = 208 bits (230), Expect = 9e-49 Identities = 253/345 (73%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| ||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 103681122 GCTGGGACAGCAGGGTTTCTATGTCAGGTTCGATGTCGATGGTACGAAAGCGGCGGCTGT 103681063 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| | ||||||| ||||||||| ||||||||||| | || Sbjct 103681062 ACCTGCGCACCGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATGT 103681003 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || ||||||| ||| ||||| | || Sbjct 103681002 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTCATGAGCGCAGTGGGGT 103680943 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || || | |||| ||| | || ||||||| |||||||| || ||| | ||| Sbjct 103680942 CGTCACTGGGTGTTGGCAAGGCATTCCGCAGGAAGGTAAAGAGCGGGTGCGCCTTCTCAC 103680883 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | || || ||||||||||| || | |||| || |||||||| ||| ||||| || | Sbjct 103680882 CATTCACTTCGCACTTCTCAAACAATGTAAAATTGGGCTCGAACCCGCCACCAGGTCGAA 103680823 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | | ||| |||||| || ||||| |||||| | | || |||| Sbjct 103680822 CATACTTGAGGGAATTCAGAATCTCTTCATTCTTGCCATTCTCCT 103680778 >seq3 Length=122627250 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| || |||||||||| || | | Sbjct 38928475 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCCATTGGCAACTTCGCTTCCCGCCTAC 38928533 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 38928534 TCGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 38928593 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || || ||| | | || | || ||||| Sbjct 38928594 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCTGCCCGCATCAGGCTGATACGCCACTAC 38928652 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCT-GGC 50646 |||||| | || ||||| || ||||| |||||||||| | ||||| | ||| Sbjct 38928653 GTGCAGCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCCTGGAGTTCGTAGGC 38928712 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGC 50671 | ||||||||||||| || ||| Sbjct 38928713 AAGT-TGGACGAGCGCTGTCGTCGC 38928736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608772737306480