Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq22 125 6e-24 seq4 123 2e-23 seq19 118 9e-22 seq25 107 2e-18 seq14 104 2e-17 seq8 87.8 2e-12 >seq22 Length=147524369 Score = 125 bits (138), Expect = 6e-24 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| |||||||| || || ||||| ||||| | | Sbjct 136851182 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 136851123 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | |||||||||||||||||||| | || || |||||||||| || Sbjct 136851122 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGG 136851063 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 136851062 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 136851003 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || || || || ||||| ||| Sbjct 136851002 TCAAGAGTGATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATGTTG 136850952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||||| ||| | |||||||||||||||| ||| ||||| | | Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGAC 124974634 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||||||| || || ||| | || ||||||||||| || || Sbjct 124974633 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 124974574 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||| || |||||| Sbjct 124974573 ATTCCTTCCTTATCCTGGATCTT 124974551 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| | ||| |||||||| || || ||| | |||| | | Sbjct 93829888 CCACCTCGCAGACGCAGCACCAGGTCCAAGGTGGACTCTTTCTGGATGCTGTAGTTGGAC 93829829 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||||||||| || | || || | |||||||| || Sbjct 93829828 AGGGTGCAGCCATCCTCCAGCTGTTTGCCAGCGAATATCAGCCACTGCTGGTTAGGTGGG 93829769 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | | |||||||||| |||||| Sbjct 93829768 ATGGCTTCCTTGTCTTGGATCTT 93829746 >seq4 Length=117747451 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| |||||||| || || ||||| || || | | Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||| | ||||| ||||||||||| || | || || ||||||||||| || Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 92566869 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || ||||| |||||||| || || ||||| ||||| | | Sbjct 57051159 CCACCGCGCAGACGCGGCATCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 57051218 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | |||||||||||||||||||| | || || ||||||||||| || Sbjct 57051219 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGG 57051278 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 57051279 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 57051338 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || || || || ||||| ||| Sbjct 57051339 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTTACGAAGATCTGCATGTTG 57051389 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || |||||||| || ||||| || || | ||||| || | || Sbjct 57378935 GAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATC 57378876 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||| ||||| ||| | ||| || || || Sbjct 57378875 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATC 57378816 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | ||| || |||| ||||||| || | ||| ||||| Sbjct 57378815 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 57378756 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||||||| | || || || || || |||||||||| Sbjct 57378755 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 57378718 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| | ||| ||||| | || || ||||| ||||| | Sbjct 55387562 CCGCCACGCAGACGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGAA 55387621 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||||||||| || | | || ||||||||||| || || Sbjct 55387622 AGGGTGCGTCCATCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGGG 55387681 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| || || | || || |||| ||||||| Sbjct 55387682 ATGCCTTCTTTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCACC 55387741 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 55387742 TCAAAAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATGTTG 55387792 >seq19 Length=145277780 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||||||| || ||||| || || | | Sbjct 136501830 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAGA 136501887 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || |||||||||| || ||| | Sbjct 136501888 GGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT-CAGGGGGA 136501946 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 136501947 TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 136502006 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||| ||| | || || | || || |||||||||| Sbjct 136502007 CCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCATTTTGA 136502057 >seq25 Length=158037523 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 45424430 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGA 45424487 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || || ||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 45424488 GAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGA 45424547 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 45424548 TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCACCT 45424607 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || ||||| || ||||| Sbjct 45424608 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 45424653 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||| ||| |||| |||| || ||||| || || |||| || || | ||||| || Sbjct 146223649 AGCCAGAGGACCAGGTGCAGGGTCGACTCTTTCTGGTTGTTGTAATCAGAGAGGGTGCGG 146223708 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || ||||| || ||||| ||| | || || ||||||||||| || | | | || Sbjct 146223709 CCATCTTCCAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC--GGGAGATGGCCTCT 146223766 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 || || |||||| ||||| | ||| || |||| ||||||| | || | ||| Sbjct 146223767 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTG 146223826 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||||||||| |||| || || | || || ||||||| || Sbjct 146223827 ATGGTCTTGCCAGTTAGGGTCTTCATGAAGATCTGCATTTGGA 146223869 >seq14 Length=171410997 Score = 104 bits (114), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 144150351 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGA 144150408 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || || ||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 144150409 GAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGA 144150468 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | | | || |||| ||||||| | Sbjct 144150469 TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCT 144150528 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | ||| |||||||||||||| | || || || || || |||||||||| Sbjct 144150529 CTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 144150579 >seq8 Length=97450195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||||| ||| | |||||||||||||||||||| ||||| | | Sbjct 30032848 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 30032907 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||||||| || || ||| | || ||||||||||| || || Sbjct 30032908 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 30032967 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||| || |||||| Sbjct 30032968 ATTCCTTCCTTATCCTGGATCTT 30032990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422242927449992