Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq22 111 1e-19 seq4 109 5e-19 seq25 104 2e-17 seq14 102 7e-17 seq19 86.0 5e-12 >seq8 Length=97450195 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | || ||||| |||||||||||||| || Sbjct 30032847 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 30032906 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 30032907 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 30032966 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 30032967 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 30033026 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 30033027 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||||| || | || ||||| |||||||||||||| || || ||| || Sbjct 95921286 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 95921227 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || |||| |||| || | ||||||||| ||||| || ||||| Sbjct 95921226 ATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAAT----TCCTT 95921171 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || | || || || | ||| | ||||||| | || |||||| || | Sbjct 95921170 ATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTGAT 95921111 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || ||||| |||||||| Sbjct 95921110 GGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 95921075 >seq22 Length=147524369 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | || ||||| ||||||| |||||| || Sbjct 124974694 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGA 124974635 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 124974634 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 124974575 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 124974574 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 124974515 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 124974514 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq4 Length=117747451 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || |||||||| || ||||||||||| | Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | |||||| |||||||| || ||| | || || | |||||| || || || Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 | ||| ||||||||| || || || || | |||| |||||| || ||| ||| Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || ||||| ||||| || || || || ||||||||| Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 92566866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | ||||| ||| || Sbjct 57378931 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 57378872 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | ||| || || || || |||||||| || || Sbjct 57378871 AGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGG 57378812 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 57378811 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 57378752 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 57378751 CCGGTCAGGGTCTTCACGAAGATCTGCAT 57378723 >seq25 Length=158037523 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 45424445 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCT 45424504 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||| || || Sbjct 45424505 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 45424564 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| |||||| || ||| ||||| | ||| | || ||| Sbjct 45424565 ATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 45424624 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || ||||| ||||||||| Sbjct 45424625 CCGGTCAGGGTCTTCACAAAGATCTGCATG 45424654 >seq14 Length=171410997 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| |||| || | || ||||| |||||||||||||| || || ||| || | Sbjct 137735174 TCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCT 137735233 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 137735234 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 137735293 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || | || || || | ||| | ||||| | | || ||||| | || | Sbjct 137735294 ATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGAT 137735353 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||||||||| Sbjct 137735354 GGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 144150366 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCT 144150425 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||| || || Sbjct 144150426 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 144150485 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| || ||| ||||| | ||| | || ||| Sbjct 144150486 ATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 144150545 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 144150546 CCGGTCAGGGTCTTCACGAAGATCTGCAT 144150574 >seq19 Length=145277780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | ||||| ||| || Sbjct 136501845 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 136501904 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || |||||||| || || Sbjct 136501905 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGGATGCCCTCTTTATCCTGG 136501963 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 136501964 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 136502023 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||| || || | || |||||||| Sbjct 136502024 CTGGTCAGGGTCTTCAGGAAGATCTGCAT 136502052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813681532104