Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 6e-14 seq8 89.7 8e-13 seq22 86.0 9e-12 >seq14 Length=171410997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| ||||||| ||| || || || || ||| || || || || || || Sbjct 137735163 CCACCCTGAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 137735221 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | |||||| || | || || |||||||| |||| || |||||||| ||||| Sbjct 137735222 CAAAGTCCGGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 137735281 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 137735282 AATTCCTTCCTTATCCTG 137735299 >seq8 Length=97450195 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || |||| ||| | || || || ||| || || || || || || Sbjct 30032848 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 30032906 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 30032907 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 30032966 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 30032967 AATTCCTTCCTTATCCTG 30032984 >seq22 Length=147524369 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || |||| ||| | || || || ||| || | || || || || Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ANGTTGTAGTCAGA 124974635 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 124974634 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 124974575 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 124974574 AATTCCTTCCTTATCCTG 124974557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743497012119040