Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2669 266 3e-66 seq18 159 3e-34 seq8 104 2e-17 seq5 98.7 9e-16 seq6 96.9 3e-15 >seq2669 Length=49141 Score = 266 bits (294), Expect = 3e-66 Identities = 607/904 (67%), Gaps = 32/904 (4%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 22122 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 22181 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT-----GAACAATAGTAT 16039 |||||||| ||| ||||||||||| | ||||| ||||||| | ||| ||| | | Sbjct 22182 TCCTTCTAGTGAGATATTTTCCATGCAGTCAAACGGATTTTCTACTCTGAA-AATCTTGT 22240 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 | | | |||| |||| || | || || |||||||| || |||||||| ||||| Sbjct 22241 TAA----AACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATC 22296 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 ||| || |||||||| || | || || || | || || | | || | | ||| Sbjct 22297 AAAGTGCAATTCATTCCGATGAGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCT 22356 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAAC-GGAGGGTTTAATAA 16218 || |||| | ||||||| ||||| || | || | | || || || | Sbjct 22357 ATCCTAACG---TTGGTGATTATCTCTCTGACC-CTCTGCTCCGCTGGCTTGTGTACCAG 22412 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 ||| || ||||| | || ||||| ||||| || || || ||||| ||||| || | ||| Sbjct 22413 GTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTC 22472 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAG-TCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 || ||||||||||| || ||||| || || ||||| || | ||| ||||| | |||| Sbjct 22473 ATTGGAAAATGTAAGGCCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAA 22532 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | ||||| |||||||| || ||||| || |||||||| || || | || || || |||| Sbjct 22533 AAGAACCGGAAAAGAAGATTCCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACG 22592 Query 16398 T--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTT 16455 | || ||| | | | |||| ||||| | || || | || ||||| Sbjct 22593 TAGCCTCTTTGTCC--CCAGTCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGG 22650 Query 16456 CATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATC 16515 ||| | || || ||||| || | ||| | | |||| ||| |||| ||| ||||| || Sbjct 22651 CATCGTTTCAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTC 22710 Query 16516 TATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA 16575 || || ||| |||||||| || || || || ||||| || || || || ||||| || Sbjct 22711 AATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAA 22770 Query 16576 GCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAAC 16635 || | || || | | ||| ||||| | ||| | || | ||||| || || || Sbjct 22771 ACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGAC 22830 Query 16636 TATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC 16695 ||| ||||| || |||||||| || || || | || ||||||| | | || ||| Sbjct 22831 TATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAGATATAAAATGTCTCTC---ATC 22887 Query 16696 TGAAAGTTTTA------ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 | |||| | ||||| || ||| || || | || ||||| || |||| Sbjct 22888 GG---GTTTCAGAGCCTCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGT 22944 Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 |||||| || || | || || || ||||| | ||| || || | ||| | || ||||| Sbjct 22945 CCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTACTCGATGGGAAA 23004 Query 16810 CACA 16813 ||| Sbjct 23005 GACA 23008 >seq18 Length=146158383 Score = 159 bits (176), Expect = 3e-34 Identities = 495/751 (66%), Gaps = 24/751 (3%) Strand=Plus/Plus Query 16073 GCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGG 16132 ||||||||||| || ||||| ||||| ||| |||||||| | || | | | ||||| Sbjct 66703187 GCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGAGTGTCACAGGC 66703246 Query 16133 ATTGCTTCTGTTAAAAAA---tttttttCTATATTAACCGCTTCAATGATTATATCTCTT 16189 | || || | | | | | ||||| ||||| | | ||||||| ||| || Sbjct 66703247 AAGGCATCCATGAGGATCCCCTCCTGCTCTATCCTAACCTCGTTGGTGATTATTTCTTTT 66703306 Query 16190 ACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACA 16248 ||| | || || | || || || | ||| || ||||| | | |||| || || Sbjct 66703307 ACT-CTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGTAGACAAAGTCCCA 66703365 Query 16249 ATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA-TGTAAGACCTGGCATTAGTC 16307 || || || ||||| || || || | ||| || ||||| |||||| || ||||| |||| Sbjct 66703366 GTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCCGGCATCAGTC 66703425 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG-AAAAGAATATACCTTCAACT 16366 | |||| || | ||| ||||| | ||||| ||||||| ||||||| || |||| || Sbjct 66703426 CCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGCTTCTACC 66703485 Query 16367 GCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttttta 16426 |||||||| || || | ||| || | || || | ||| | |||| | Sbjct 66703486 GCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGTCCAATGCAAG 66703545 Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486 ||||| | || || | ||||| ||| | || || ||||| || | ||| | | Sbjct 66703546 GCCCAGTCAGCCTTCT------CACAG-GCATTGTTTCAATAGCATTGAAAAGATATTCT 66703598 Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAAT- 16545 ||||||||| |||| ||| ||||| || || || | ||||||||||| || || || Sbjct 66703599 CTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAGTGTATG 66703658 Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGA 16605 |||| ||| | | || || |||||||| || | ||| || | | ||| | ||| Sbjct 66703659 CTTCT-CATGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTTGAATTTCTTG 66703716 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 | ||| | || | |||||| | || | ||| ||||| || |||||||| || || || Sbjct 66703717 GCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAAGAAAGCCAG 66703776 Query 16666 TATGTGTTTAATAAAAtttttttCGT--TATCTGAAAGTTTTAACCAGT-CAGAAAAATC 16722 ||||| ||||||| | | || | | | | || || ||||| | | | ||| Sbjct 66703777 AATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTT--CCCAGTGCTG--ATATC 66703832 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 || || | || ||||| || |||||||||| | || |||| || | ||||| | Sbjct 66703833 CTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTGTACATCTG 66703892 Query 16783 CCATATGTCTTCGTAAACAATAGGAAACACA 16813 ||| || || | ||| || ||||| ||| Sbjct 66703893 CCAGATATCATGGTACTAGATGGGAAAGACA 66703923 >seq8 Length=97450195 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||| ||||| ||| | | || ||||||||| | | | | ||| |||| | | Sbjct 32788764 CTTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCAGCCATGACTGCAAAT 32788823 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct 32788824 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTC 32788883 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 32788884 TCCATAAAATCAAAGGGATTTTCTG 32788908 >seq5 Length=114734182 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||| || ||||||||||| || ||||| || || ||||| || Sbjct 21262835 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 21262776 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 21262775 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 21262716 Query 16379 AC 16380 || Sbjct 21262715 AC 21262714 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 21263886 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 21263827 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||||| ||| ||||||||||| || ||||| ||||||| Sbjct 21263826 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 21263786 >seq6 Length=112758220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| |||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 9090341 ATTCGACATGACTCCCATTCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 9090400 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||||| ||| ||||||||||| || ||||| ||||||| Sbjct 9090401 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 9090441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493719213200