Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq24 1063 0.0 seq13 170 1e-37 seq6 84.2 2e-11 >seq24 Length=120003353 Score = 1063 bits (1178), Expect = 0.0 Identities = 1013/1291 (78%), Gaps = 6/1291 (0%) Strand=Plus/Minus Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417 |||||| ||||||||||||| |||||||||||| | || | |||| ||| ||| |||| Sbjct 67211334 CTGTGGACCCTGGGCTGCTACATGCTGCTGGCCATCCTTGCCCTGAAACTGTCCTTCAGA 67211275 Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477 | || ||||| | ||| || |||||||||| || |||| || || || || |||| Sbjct 67211274 CTGAAGTGTGACTTCGATGCCATGGATCTGGACTCTGGGGAATTTCAAAGCCAATACTGC 67211215 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 ||||| | ||||||| | ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 67211214 AGGGATCTTCTGTACAAGACCCTGAAGCTGCCAGCCAAGAGTTCCATCAACTGCTCAGGG 67211155 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 ||| |||||||| ||| |||| ||| |||||| || | | ||||||||| | ||| Sbjct 67211154 GTCATTCGAGGGGAACAGAAAGCGGTGACCCAGGCTCTGTTGAATAACCTGGAAATTAAG 67211095 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || |||||| || ||||| | | | ||||| | || || ||||||||||| | Sbjct 67211094 AAGAAGCGGCAGCTCCTCACAGAGGCTGACTACCTTAGGATGACAGCAGACTGTGAGCAC 67211035 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAG-CTAGACTTCCC 107716 |||||| |||| |||||||| |||||| |||||||||| || |||||| | || |||||| Sbjct 67211034 TTCAAGACCCAGAGGAAGTTTATACAGGTCCCACTGAGCAAGGAAGAGGCCAG-CTTCCC 67210976 Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776 ||| || ||||| |||||||| |||||||||||||| ||||| ||| || |||||||||| Sbjct 67210975 CATCGCGTACTCCATGGTGGTGCATGAGAAGATTGAGAACTTCGAAAGGTTGCTGCGAGC 67210916 Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836 ||||| ||||||||||| ||||||||||||| |||||| |||||| ||||| | || Sbjct 67210915 TGTGTACACCCCTCAGAACGTATACTGTGTCCATGTGGATCAGAAGTCTCCAGAACCCTT 67210856 Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896 || |||| |||| |||||| | || || ||||||||||||||||| || |||||||| Sbjct 67210855 TAAGCAGGCAGTCAGGGCCATCGTGTCATGTTTCCCCAATGTCTTCATAGCTAGTAAGTT 67210796 Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956 ||| | ||||| ||||| |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 67210795 GGTATCAGTGGTCTATGCTTCCTGGTCTAGGGTGCAGGCTGACCTAAACTGCATGGAAGA 67210736 Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 |||||| |||||| | |||||||||| ||| | ||||| || || ||||| ||||| || Sbjct 67210735 CTTGCTTCAGAGCCCCATGCCATGGAAATACCTCCTGAACACCTGTGGGACGGACTTTCC 67210676 Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076 ||| || |||||||| ||||||||| |||||||||| | ||||| || |||||||||| Sbjct 67210675 CATCAAAACCAATGCTGAGATGGTCAAGGCCCTCAAGCTATTGAAAGGGCAGAACAGTAT 67210616 Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTC--GCTGGAAATACCGCTATGAGGTG 108134 |||||| |||||||| || || |||||||| |||||||||| | |||||||||| Sbjct 67210615 GGAGTCAGAGGTACCACCTCCA--CATAAAAAATCCCGCTGGAAATATCACTATGAGGTG 67210558 Query 108135 ACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATG 108194 ||||||||| || || |||||||||| |||| || || ||| |||| || ||||| Sbjct 67210557 ACAGACACATTGCACATGACCAGCAAGAGGAAGACGCCGCCACCTAATAACCTAACCATG 67210498 Query 108195 TTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC 108254 ||||| ||||||||||| | ||||| ||||||| ||| | ||||||| ||| ||| Sbjct 67210497 TTCACTGGGAATGCCTACATGGTGGCTTCTCGAGACTTCATTGAACATGTGTTAAGGAAC 67210438 Query 108255 CCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTC 108314 | ||| ||| |||| | |||||||| ||||||||||| || ||||| || ||||| Sbjct 67210437 TCAAAAGCCCGGCAACTGATCGAATGGGTAAAAGACACCTACAGTCCCGATGAGCACCTT 67210378 Query 108315 TGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTAT 108374 ||||||||||| |||||||| ||||||||||||| || | ||| || | || | | Sbjct 67210377 TGGGCCACCCTACAGCGTGCCTCGTGGATGCCTGGATCAGATCCCTCGCATCGAAAATTT 67210318 Query 108375 CACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGAT 108434 || | |||||||||| ||||| || || || ||||||| | |||| |||||||| Sbjct 67210317 GACCTGTCAGACATGAGAGCCATTGCAAGACTAACCAAGTGGTACGACCATGAGGGAGAC 67210258 Query 108435 GTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATT 108494 || | ||||| ||||| | | ||||| |||||||| | | |||| |||| || Sbjct 67210257 GTTGAGAACGGGGCACCTTACACGTCTTGCTCAGGAATCCACCAGCGGGCTGTCTGTGTT 67210198 Query 108495 TACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTT 108554 || ||| | ||||||||| ||||||| || |||||||||||||||||||| ||||||||| Sbjct 67210197 TATGGGTCAGGGGACCTGCACTGGATACTTCAGAACCATCACCTCTTGGCCAACAAGTTT 67210138 Query 108555 GACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCC 108614 ||||| | |||||||||||| || || ||||| |||||||| || | ||||| || ||| Sbjct 67210137 GACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTAGAAGAATATTTGCGTCACAAAGCC 67210078 Query 108615 ATCTATGGGACTGAACTTTGAGCTGCACTGT 108645 ||||||||||||||||| |||| |||||| Sbjct 67210077 ATCTATGGGACTGAACTATGAGACACACTGT 67210047 >seq13 Length=57673148 Score = 170 bits (188), Expect = 1e-37 Identities = 584/888 (66%), Gaps = 33/888 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| ||| || ||||| || || || ||||| ||| | ||| Sbjct 14688779 CCTCTTAGTAAAGAAGAGGTAGGCTTTCCAATTGCATATTCCATCGTGGTTCATCATAAG 14688720 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 14688719 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 14688660 Query 107808 CACGTGGAT-GTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| | ||| ||||| ||| ||| ||||| ||| ||| || Sbjct 14688659 CACGTGGACAGAAAAG----CAGAGGAATTCTTTTTAGACGCGGTGCAGGGCATCGCATC 14688604 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| |||||||| ||||||| |||||| || |||||||| |||||| Sbjct 14688603 CTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCGTCCTGGAG 14688544 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || | |||||||| ||||| ||| | ||| || | |||| | | ||| | ||| Sbjct 14688543 TCGGGTTAAGGCTGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAATGCAAACTGG 14688486 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || |||||||| || ||||| || || ||| Sbjct 14688485 AAGTACTTGATCAATCTCTGTGGTATGGATTTCCCCATTAAAACCAACCTGGAAATTGTC 14688426 Query 108042 CTGGCCCTCAAGATGTTGA-AGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGA 108097 | |||||| | | |||| || ||||| |||| ||||| | ||| | | Sbjct 14688425 AGGAAGCTCAAGTGCTCCACAGGGGAA-AACAGCCTGGAAACTGAGAAGATGCCTCCCAA 14688367 Query 108098 GTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGTACCCTAC 108154 ||| || | | |||||| | | || || || | ||| | || Sbjct 14688366 ---CAAGGAAGAGAGATGGAAAAAAAGATACACCGTTGTCGATGGGAAGCTGGTCAACAC 14688310 Query 108155 CAGCA-AGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 | | || ||| ||| |||| || | || | || | || |||| | |||||| Sbjct 14688309 TGGAATAGGCAAAGCACCACCCCCACTCAAAACT--CCTCTCTTTTCAGGCAGTGCCTAC 14688252 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACT 108271 || |||| | | | | | ||| | || | || || || || | |||| | Sbjct 14688251 TTCGTGGTCAGTAGGGAATATGTAGGCTACGTGCTGGAAAATGAAAATATTCAAAAGT-T 14688193 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | | ||||||| | ||||| || ||||| || || ||||||||||||| | || | Sbjct 14688192 GATGGAATGGGCACAGGACACATACAGCCCAGATGAGTTCCTCTGGGCCACCATCCAAAG 14688133 Query 108332 TGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCC-CAAGTATCACATCTCAGACATG 108389 | ||| | | | ||||| || ||||| | | || ||||||| || | ||||||||| Sbjct 14688132 -GATCCCCGAAGTCCCTGGTTC-GTTCCCCTCAAGCCACAAGTATGACTTGTCAGACATG 14688075 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | |||||| || ||| | ||||||||||||||| ||| || ||||| || || || Sbjct 14688074 AATGCCATTGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGCGATGTTTCCAACGGTGCC 14688015 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 |||||| |||| ||| ||||| |||| | | | | ||||| | ||| || || ||| Sbjct 14688014 CCTTATCCACCGTGCGCTGGAGTCCACGTGCGCTCTGTGTGCATCTTCGGAGCTGGTGAC 14687955 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || |||||| || | | || ||||| || || || ||||||||| Sbjct 14687954 TTGAGCTGGATGCTGCGCCAACACCACCTTTTTGCCAATAAGTTTGAC 14687907 >seq6 Length=112758220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 235/353 (67%), Gaps = 22/353 (6%) Strand=Plus/Plus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCC 107787 ||||| ||||| | || |||| | ||||| | |||| | | || | | ||||| Sbjct 36188181 ATGGTCATCCATCACAATTTTGATACCTTTGCAAGGCTCTTCAGGGCAATCTTCATGCC- 36188239 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGG 107847 ||| || || |||||||| |||||||||| ||| | ||| ||||||| || | Sbjct 36188240 -TCAAAATATCTACTGTGTTCACGTGGATGAAAAGGCAACAGCTGAATTCAAAGGTGCCG 36188298 Query 107848 TCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 | | | ||| | |||||||||||||| ||| |||| |||| ||| |||||| Sbjct 36188299 TGGAA-CAGTTAGTGAGCTGCTTCCCCAATGCCTTTCTGGCTTCTAAGATGGAGCCGGTG 36188357 Query 107907 GTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG-- 107960 || |||| ||| ||| | | || |||||||||||||| || ||||| || Sbjct 36188358 GTCTATG----GTGGAATCTCCCGGCTCCAGGCTGACCTGAACTGCATCAAAGACCTGTC 36188413 Query 107961 CTC--CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018 ||| | ||| || || ||||||||| | || || || || |||||||||| Sbjct 36188414 CTCCTCCGAG----GTCCCCTGGAAGTACGCCATCAACACCTGTGGACAAGACTTCCCCC 36188469 Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAAC 108071 | || ||||| ||||| || | | ||| || | | ||||| |||||| Sbjct 36188470 TGAAAACCAACAAGGAGATAGTTCAGTACCTGAAAGGGCTTAAGGGGAAGAAC 36188522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255378808788