Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq22 114 1e-20 seq25 111 1e-19 seq4 109 4e-19 seq19 95.1 1e-14 >seq22 Length=147524369 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 136851164 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 136851105 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || |||||||||| || ||| |||| || || | || |||||||| Sbjct 136851104 AGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCCTTGTCTTGG 136851045 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 136851044 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 136850985 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||| |||||||| ||||| ||||||||| Sbjct 136850984 CCCNTCAGGGTCTTCACGAAGATCTGCATGTTG 136850952 >seq25 Length=158037523 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 45424426 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 45424485 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || ||||| || |||| || ||| ||||| || || Sbjct 45424486 GAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 45424545 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| || || ||| || ||| | | |||| | |||||| Sbjct 45424546 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCAC 45424605 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 45424606 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 45424654 >seq4 Length=117747451 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| |||||||| || ||| | | | || || Sbjct 92566657 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATCCTCT 92566716 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||||||||||| || ||| ||||| || || | || |||||||| Sbjct 92566717 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGG 92566776 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 92566777 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTG 92566836 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||||||| Sbjct 92566837 CCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 92566869 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 || ||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||||| Sbjct 57051179 CAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAG 57051238 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 ||||| || || ||||||| || ||| ||||| || || | || |||||||| || Sbjct 57051239 CTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGAT 57051298 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | | |||| | ||| ||||| | || || |||||||| Sbjct 57051299 CTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCC 57051358 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 | |||| ||||| || ||||| ||||||||| Sbjct 57051359 CATCAGGGTCTTTACGAAGATCTGCATGTTG 57051389 >seq19 Length=145277780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||||||||| |||||||| || Sbjct 136501826 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 136501885 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || |||| || ||| ||||| || || Sbjct 136501886 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 136501945 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| || || ||| || | | | | |||| | |||||| Sbjct 136501946 -ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 136502004 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| ||| || ||||||| ||||| ||||||| ||||| ||||| ||| Sbjct 136502005 CTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCATTTTG 136502056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395059975036402