Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2669 244 1e-59 seq18 185 8e-42 seq8 102 8e-17 seq6 96.9 3e-15 seq5 96.9 3e-15 >seq2669 Length=49141 Score = 244 bits (270), Expect = 1e-59 Identities = 528/785 (67%), Gaps = 16/785 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || ||| || || || || ||||| | Sbjct 22084 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATCCT 22142 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| | ||||| |||||| | | || | || | | |||| || || | | | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 || || || | ||||||||||| || ||| ||| |||||||| || || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT--CGTTTATAATA 14152 || || | | | | || || | ||||| ||| |||| | || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTAT--------CCTAACGTTGGTGATT 22374 Query 14153 ATCGTAATAA---TTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 ||| | | | | | | || | | || || || || || | || ||| Sbjct 22375 ATCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCA 22434 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || ||||| || | ||||| |||||||||||||| || || |||||||| | || ||| Sbjct 22435 AAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGC 22494 Query 14270 ATCAATCCTC-GtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 |||| || | |||| || | ||| ||||| | || || || ||||||||||| ||||| Sbjct 22495 ATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCC 22554 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 || || || ||||| || | | ||||||||| ||| || | ||||| | |||| Sbjct 22555 TTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCA 22614 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||||| |||| || || || | | || ||| |||||||||||||| || | Sbjct 22615 GCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAG 22674 Query 14449 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 || ||| | || || | | | |||||| || |||||||| || ||||||||||| Sbjct 22675 ATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGA 22734 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 ||||||||||||||| || || || || ||||| ||||| | || |||| ||| || Sbjct 22735 GTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAAC 22794 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| | ||||| || |||| || ||||| ||||| |||||||| |||||||| || Sbjct 22795 TTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAA 22854 Query 14629 TGCCA 14633 |||| Sbjct 22855 AGCCA 22859 >seq18 Length=146158383 Score = 185 bits (204), Expect = 8e-42 Identities = 393/579 (68%), Gaps = 17/579 (3%) Strand=Plus/Plus Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA-TGTTAATCCT 14266 |||| || || || | ||||| ||||| |||||||| || || ||||| ||| | || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA-GAATAT 14325 ||||||| ||| |||| || | ||| ||||| | || || || || ||||| ||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 | | || || || ||||| || | | ||||||| || | | |||| ||||| | | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| | ||||| |||| || | | | |||||||||||||||||| || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATAGCATTGAA 66703588 Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | || ||| | ||||| | | |||||| || |||||||| | |||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 |||||||||| || ||| | | || || |||| |||||| | ||| |||| ||| Sbjct 66703649 AGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACTTG 66703707 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | ||| | ||||| || |||| ||| |||| | ||| |||||||| |||||||| Sbjct 66703708 AATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAA 66703767 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC--ATTGCTGAGTTTTTTCCAATCG 14683 || |||| |||| ||||| | | ||| || || | || || ||| | Sbjct 66703768 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAG--CTTCCCAGT-- 66703823 Query 14684 GCT-AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||| | |||||| ||||| || || || ||| | |||||||| | || ||||||| | Sbjct 66703824 GCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCT 66703883 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 ||||| ||| || || | || | || ||||| || Sbjct 66703884 GTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 66703922 >seq8 Length=97450195 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 32799411 >seq6 Length=112758220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||| ||| | || ||||||| ||| ||||| || | ||| ||| ||| || Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 || || ||||||||||| ||||| || || | ||||| || Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGC 9090605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || ||| || || || || |||||| | Sbjct 9090303 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATTCT 9090361 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 13975 CATAAAATCAAATGGATTT 13993 ||| || ||||| |||||| Sbjct 9090422 CATGAAGTCAAACGGATTT 9090440 >seq5 Length=114734182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| ||||| || || || ||||| | Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 21262717 CCACAACGCGTTCTCC 21262702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||||||||||||||||||||| || || || Sbjct 21261579 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 21261520 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | || |||| Sbjct 21261519 GAAGCCATAGAAACAGCGGGCCTCTG 21261494 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || ||| || || || || ||||| | Sbjct 21263924 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATCCT 21263866 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 13975 CATAAAATCAAATGGATTT 13993 ||| || ||||| |||||| Sbjct 21263805 CATGAAGTCAAACGGATTT 21263787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326535290160