Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 1e-12 seq8 87.8 1e-12 seq22 84.2 2e-11 >seq14 Length=171410997 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | ||| | ||||| | ||||| |||| || || || |||||| Sbjct 137735148 TTCCTTTTCTTAGCACCACCCTGAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGA 137735207 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| || || || ||| |||| || || Sbjct 137735208 ATGTTGTAGTCAGACAAAGTCCGGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTC 137735267 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAG 18261 || ||||| || | ||||||||||| || || | ||| || | | | | || Sbjct 137735268 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGG--CCTTTACATTTTCTATAG 137735325 Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 |||| ||| || |||| |||||| |||| || || | || || |||||||| | Sbjct 137735326 TGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCT 137735385 Query 18322 GCATT 18326 ||||| Sbjct 137735386 GCATT 137735390 >seq8 Length=97450195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | ||||| ||||| | |||| ||||| || || || |||||| Sbjct 30032833 TTCCTTTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA 30032892 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| || || || ||| |||| ||||| Sbjct 30032893 ATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTC 30032952 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | |||| Sbjct 30032953 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTG 30033012 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | |||||| |||| || || | || || ||||| || ||| Sbjct 30033013 TCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGC 30033072 Query 18324 AT 18325 || Sbjct 30033073 AT 30033074 >seq22 Length=147524369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | ||||| ||||| | |||| ||||| || || || |||||| Sbjct 124974708 TTCCTTTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA 124974649 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 | ||||||||| | || || | |||||||| || || || ||| |||| ||||| Sbjct 124974648 ANGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTC 124974589 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | |||| Sbjct 124974588 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTG 124974529 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | |||||| |||| || || | || || ||||| || ||| Sbjct 124974528 TCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGC 124974469 Query 18324 AT 18325 || Sbjct 124974468 AT 124974467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379329381267690