Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 118 9e-22 seq22 111 1e-19 seq14 107 2e-18 seq18 100 3e-16 seq4 91.5 1e-13 >seq8 Length=97450195 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || ||||| ||||| ||||| |||| |||||||| || Sbjct 30033074 ATGCAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 30033015 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 30033014 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 30032955 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| |||| || || || ||| Sbjct 30032954 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 30032895 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || || || ||||||||||| | ||||| |||| ||| Sbjct 30032894 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 30032847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| ||||| ||| |||||||| || Sbjct 95921075 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCCCGAGGTTGAACCCTCG 95921134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | | |||| || || | || | | ||| |||||| | || || || | Sbjct 95921135 GACACTATAGAAAATGTAAAG--GCCAAGACCCAGGATAAGGAA----TTCCTCCTGATC 95921188 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || |||| || ||| ||||||| |||| || || || | Sbjct 95921189 AGCAGAGGCTGATCTTTACTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACA 95921248 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || || ||||||||||| | ||||| Sbjct 95921249 ACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 95921288 >seq22 Length=147524369 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||||| ||||||||||| ||||| ||||| || ||||| || || || || Sbjct 105164807 ACCTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTT 105164748 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || || || ||||| |||||||||||||| || || Sbjct 105164747 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTA 105164688 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 105164687 CCGGTCTCCGTCTGGGACTCAATGATGGC 105164659 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| ||||| |||| |||||||| || Sbjct 124974467 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 124974526 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 124974527 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 124974586 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| |||| || || || ||| Sbjct 124974587 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 124974646 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||| || || || ||||||||||| | ||||| |||| ||| Sbjct 124974647 NTTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 124974694 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| |||| ||||| || ||||| | || || || || Sbjct 136850953 AACATGCAGATCTTCGTGAAGACCCTGANGGGCAAGACCATCACTCTTGAGGTCGAGCCC 136851012 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || || Sbjct 136851013 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTAAC 136851072 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || |||||||| ||||||||| |||| || || || ||| || Sbjct 136851073 CAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 136851132 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || | || ||||| || Sbjct 136851133 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 136851167 >seq14 Length=171410997 Score = 107 bits (118), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || ||||| ||||| | || |||||||| || Sbjct 137735389 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTTGAACCCTCA 137735330 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | | |||| || || | || | | ||| |||||||| | || || || | Sbjct 137735329 GACACTATAGAAAATGTAAAG--GCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATC 137735272 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || ||||| || ||| ||||||| |||| || || || | Sbjct 137735271 AGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATAGCCGGACTTTGTCTGACTACA 137735212 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || || ||||||||||| | ||||| Sbjct 137735211 ACATTCAAAAGGAGTCCACCTTTCATCTGGTATTGAGACT 137735172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || ||| | ||| | |||| |||||||| || Sbjct 64264054 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAACCCATCTCGCTCGAAGTTGAACCCTCA 64263995 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| |||||||| | | | || ||| Sbjct 64263994 GACACTATAGAAAATGTAAAGGCCAAGATCTAGGATAAGGAAGGACTTGCTCTTGATCAG 64263935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| |||| || || || ||| Sbjct 64263934 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCTGGACTTTGTCTGACTACAAC 64263875 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || ||||||||||| | ||||| Sbjct 64263874 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 64263837 >seq18 Length=146158383 Score = 100 bits (110), Expect = 3e-16 Identities = 386/595 (65%), Gaps = 31/595 (5%) Strand=Plus/Minus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 ||||| || | || | || || ||| | ||||||| || || || || | |||||| Sbjct 66703919 TTTCCCATCTAGTACCATGATATCTGGCAGATGTACAGGAAAGCTGAGGCCACCTTTTGG 66703860 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCT 57668 || | || || || ||||| || |||||| | ||| | ||||| | | ||| | Sbjct 66703859 ACTGCTGAGGAGGTGGACCTTTCCAAGGATATCAGC-ACTGGGAAGCTGTGAAACCCGAT 66703801 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| ||||||| ||| | |||| || || || ||| ||||| || | || Sbjct 66703800 GAGAGACATTTTATAGCTCACATTCTGGCTTTCTTTGCAGCAAGTGATGGCATACTCAAT 66703741 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 | || ||||| || ||||| |||||| | ||||| || ||||| | || ||||| Sbjct 66703740 GCAAACTTGGTGGAGCGATTTAGCCAAGAAATTCAAGTTACAGAGGCTGGCTG-TTTTAT 66703682 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || ||| | ||| || | | || || |||||||| || || || || || Sbjct 66703681 GGCTTCCAAACTGGCATGAGAAGCATACACTCTAAAATGTATAGTCTCCTTATTGACACT 66703622 Query 57849 TACGTGAAGGA---CAACGAC-GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC 57904 ||| | || || ||| || ||||| || || ||||| || || ||||||||||| Sbjct 66703621 TACATTAAAGATCGCAAAGAAAGAGAA---TAT-CTTTTCAATGCTATTGAAACAATGCC 66703566 Query 57905 CGCGATCGCCAAGAAGGCAGAGTGG-----TCAATCAAATGGATAAAAAGCGCCACGGCC 57959 | | ||||||| || ||| || | | ||| | |||| || Sbjct 66703565 TGTG-------AGAAGGCTGACTGGGCCTTGCATTGGACTGGGGACAAAG-----AAGCT 66703518 Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC-TTTTCGGGCAG 58018 || | || || | | | || || ||||| || |||| || ||| ||||| || Sbjct 66703517 ACATATGCAGAACGAGTTGTGGCCTTTGCCGCGGTAGAAGCAATCTTCTTTTTCTGGTTC 66703458 Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC-GTTTAGCA 58077 ||||| | ||||| ||| | ||||||| || |||||||| ||||| || ||| || Sbjct 66703457 TTTTGCATCGATATTCTGGCTCAAGAAACAGGGACTGATGCCGGGCCTTACATTTTTCCA 66703398 Query 58078 ACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 | ||| | || | || | ||||||||| | || || |||| | ||| |||| Sbjct 66703397 ATGAGCTTAT-TAGCAGAGACGAGGGTTTACACTGGGACTTTGTCTACCTGATGT 66703344 >seq4 Length=117747451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| ||||| ||||| || ||||| | || || || || Sbjct 92566868 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCC 92566809 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || ||| Sbjct 92566808 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGAC 92566749 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || |||||||| ||||||||| | || || || || ||||| Sbjct 92566748 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTAC 92566689 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || | || ||||| || Sbjct 92566688 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 92566654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||||||||| |||| ||||| || ||||| | || || || || Sbjct 57051388 AACATGCAGATCTTCGTAAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCC 57051329 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || ||| Sbjct 57051328 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 57051269 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||| || ||||||||| |||| || Sbjct 57051268 CAGCAGAGGCTGATATTAGCGGGCAAACAGCTGGAGGA 57051231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748781083040