Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2669 123 5e-23 seq6 91.5 3e-13 seq5 84.2 4e-11 >seq2669 Length=49141 Score = 123 bits (136), Expect = 5e-23 Identities = 295/441 (67%), Gaps = 9/441 (2%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| ||| | || ||||| || |||| Sbjct 22577 TTGTGGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCT 22518 Query 101976 GGATCAAG-AACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 || ||||| ||| |||| | |||| || || || | ||||||||| | ||| ||| Sbjct 22517 GGCTCAAGAAACGGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGTAGA 22458 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 ||||| ||| | || | |||||||| ||| || |||| ||| | || | | Sbjct 22457 GACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAGCACCTGGTACACAAG 22401 Query 102095 CCATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 ||| | ||| | ||| | || || |||| | ||| | || || || || || Sbjct 22400 CCAGC-GGAGCAGAGGGTCAGAGAGATAATCACCAA---CGTTAGGATAGAGCAGGAGTT 22345 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||| | | || |||| || || | | |||||||| |||| ||||||| ||||| Sbjct 22344 CCTCCCGGAGGCCTTGCCCGTGAAGCTCATCGGAATGAATTGCACTTTGATGAAGCAGTA 22285 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||||| |||||||| || | || || | || |||| | | ||| | | || Sbjct 22284 TATTGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGATTTTCAGAGT 22225 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 || || || | |||||| ||||| || || || ||||| ||||| ||||| Sbjct 22224 AGAAAATCCGTTTGACTGCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTTGA 22165 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 ||| |||| | ||||||||| Sbjct 22164 GAAGCGAGTAGGCGAGTATCA 22144 >seq6 Length=112758220 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| | || ||||||||||||||| ||| | || ||||| | |||| Sbjct 9090600 TTGTGGCCTTTGCCACCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAAGATTCT 9090659 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || || || ||||||||| | ||| || | Sbjct 9090660 GGCTCAAGAAACGGGGACTGATGCCGGGCCTTACACTTTCCAATGAGCTTATTAGCAGAG 9090719 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 |||| ||| | || | |||||||| ||| || |||| || Sbjct 9090720 ACGAGGGTTTACACTGGGACTTTGCCTGCCTGATGTTCAA 9090759 >seq5 Length=114734182 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| ||| | || ||||| || |||| Sbjct 21262712 TTGTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCT 21262771 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || || || | ||||||||| | ||| || | Sbjct 21262772 GGCTCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAG 21262831 Query 102036 ACGA 102039 |||| Sbjct 21262832 ACGA 21262835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989543908859710