Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2669 266 3e-66 seq18 152 5e-32 seq8 114 1e-20 seq22 84.2 2e-11 >seq2669 Length=49141 Score = 266 bits (294), Expect = 3e-66 Identities = 594/884 (67%), Gaps = 22/884 (2%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || |||||| | ||||| || | ||||| || || || || ||||| ||||||||| Sbjct 22132 ACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGT 22191 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAAC 11449 || |||| ||||| || ||| ||||| | ||| |||| | || | | |||| | | Sbjct 22192 GAGATATTTTCCATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGC 22251 Query 11450 TCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATA 11509 || | | || || || || || || |||||||| ||| ||| |||||||| Sbjct 22252 TCCAGCATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATT 22311 Query 11510 CCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA 11569 || || || | ||| || | || | | | ||||||| ||||| |||| | Sbjct 22312 CCGATGAGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTG 22368 Query 11570 ATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAA 11629 |||||||| | | | || | ||| |||| | || || ||||| | Sbjct 22369 GTGATTATCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGG 22428 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| ||||| |||||||| ||||||||||| || || ||||| |||||||| | Sbjct 22429 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGG 22488 Query 11690 CCGGGCATCA-ATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| || ||||| || | ||| ||||| | ||||| ||||| |||||||| Sbjct 22489 CCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAA 22548 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA----CCTTGTTGCT 11802 ||||| || ||||| ||||| || || || | ||||||||| || | |||| | Sbjct 22549 GATTCCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCC 22608 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 || |||| |||||| ||||| ||||| || || || ||| ||||| ||||| Sbjct 22609 AG---TCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGC 22665 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----AC 11918 || || | || | |||| | |||| ||| ||||| | | ||||| || Sbjct 22666 ATTGAAGAGATATTCTCTTTCCTTGGGATCT-TTA---ATGTAAGTGTCAATAAGGGGAC 22721 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 | |||||||| || || || |||||||| || ||||| || ||||||||||| || |||| Sbjct 22722 TGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCT 22781 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 ||| | || || || ||||| ||| | || |||||||| || || ||||||| Sbjct 22782 CTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCAC 22841 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | | |||||| || || || | ||| |||||| | | | || || | | | Sbjct 22842 TCGCTGCAAAGAAAGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCT 22901 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| | | | ||| || || | || || || || | |||||||| ||| | | Sbjct 22902 CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGG 22961 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 || || ||||| | |||||||||||| |||| || |||||| Sbjct 22962 CTTTCTTGTACATCTGCCAGATATCATGGTACTCGAT-GGGAAA 23004 >seq18 Length=146158383 Score = 152 bits (168), Expect = 5e-32 Identities = 384/574 (67%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA-TGTTAATCCG 11692 |||| || || |||||||| |||||||| || || || ||||| ||||| ||| | || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG-AAAAGAATAT 11751 ||||||| ||| |||| || | ||| ||||| | ||||| ||||||| ||||||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAGATA-T 11808 | | || || || ||||| || || |||| |||| |||| || ||| || | | | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||| | |||||| ||||| |||| | || ||||||||| ||||| || || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAA 66703588 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 | || | ||||| | |||| | | || || || || | | ||||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 || || || || ||| | |||| || ||||| ||||| | ||||||| | || Sbjct 66703649 AGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATA-AAACAGCCAGCCTCTGTAACTTG 66703707 Query 11989 TACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 | || ||||| ||| | || || |||| | || |||||||| | |||||| Sbjct 66703708 AATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAA 66703767 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATC 12108 || || || || || |||||| | | | || || | | ||||| | | Sbjct 66703768 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTTCCCAGTGCT- 66703826 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | ||| || || | || || || ||| | |||||||| | ||| | | || | || Sbjct 66703827 GATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTGTA 66703886 Query 12169 CATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 ||| | |||||||||||| |||| || |||||| Sbjct 66703887 CATCTGCCAGATATCATGGTACTAGAT-GGGAAA 66703919 >seq8 Length=97450195 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 32799291 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 32799350 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 32799351 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32799410 Query 11772 CTACTACTCTTTCTCC 11787 | || ||||| || || Sbjct 32799411 CCACCACTCTCTCCCC 32799426 >seq22 Length=147524369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || || ||||| | || || || || || ||||| || |||||| Sbjct 105169247 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 105169188 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || || | || || |||||||||||||| || || || | Sbjct 105169187 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 105169128 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 105169127 CTGTTTCTTATACCAT 105169112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506281557280