Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2669 136 3e-27 seq18 91.5 1e-13 seq5 87.8 1e-12 seq8 82.4 5e-11 >seq2669 Length=49141 Score = 136 bits (150), Expect = 3e-27 Identities = 398/595 (67%), Gaps = 36/595 (6%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||||||||| |||| || || |||||||| | ||||||||||| ||| | ||| Sbjct 22974 ATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGACCTTTCCAAGGAT 22915 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | | || ||| || |||| |||| |||| | || || ||||| | Sbjct 22914 ATTCAGCACTGG---GAGGCTCTGAAACCCGA---TGAGAGACATTTTATATCTCATGTT 22861 Query 22462 CTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGC 22520 ||||| ||||||||| | |||||||| || || ||| | ||| || |||| || Sbjct 22860 CTGGCTTTCTTTGCAGCGAGTGATGGCATAGTCAATGAGAACTTGGTGGAGCGATTTAGC 22801 Query 22521 AAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGA 22580 || ||| || | || |||| ||| | ||||||||| || || | || ||||| Sbjct 22800 CAA-GAAGTTCAAGTTA---CAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGA 22745 Query 22581 AAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG---AA 22637 ||| ||||| |||||||||| | || || ||| ||| | | |||||| || Sbjct 22744 AAACATACACTCTGAAATGTACAGTCCCCTTATTGACACTTACAT---TAAAGATCCCAA 22688 Query 22638 TCAAGCCGCAT-TGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACA 22694 || | || | | |||| || |||| ||||| ||||| || ||||| | Sbjct 22687 GGAAAGAGAATATCTCTTCAATGCTATTGAAACGATGCCTTGTGTGAAGAAGAAGGCTGA 22628 Query 22695 GTGGGC--TGCACAATGG-CTGAATGCCACACA---TAAGTCTATCGCAACACGTCTCTT 22748 ||||| ||| | ||| ||| | || | | || || | | ||| ||| | Sbjct 22627 CTGGGCCTTGCGC--TGGACTGGG-GACAAAGAGGCTACGTATGGAG-AACGCGTTG--T 22574 Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 ||||||||| ||||| ||||| || | ||||| || || ||||| | ||||||||||| Sbjct 22573 GGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCT 22514 Query 22809 GAAGAAAC-GTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | ||| ||||| || | | |||||||| ||| | ||||| | |||| Sbjct 22513 CAAGAAACGGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGTAGAGACG 22454 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | ||| |||||||||||||||| || || |||| | ||| ||| | |||| || Sbjct 22453 AGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAGCACCTGGTACACAAGCC 22399 >seq18 Length=146158383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTT-CTGGGTCATTTGCGGCCATATTCTGG 22806 |||||||||| || || |||| || | |||| |||| || ||||| | ||||||||| Sbjct 66703498 TGGCCTTTGCCGCGGTAGAAGCAATCTTCTTTTTCTGGTTCTTTTGCATCGATATTCTGG 66703439 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGG-GTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 || ||||||| || ||||| || || |||||||| ||| | |||||| | || Sbjct 66703438 CTCAAGAAACAGGGACTGATGCCGGGCCTTACATTTTTCCAATGAGCTTATTAGCAGAGA 66703379 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| ||| ||||||| ||||||| | || |||| | ||| ||| | |||| || Sbjct 66703378 CGAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAGCACCTGGTACACAAGCC 66703322 >seq5 Length=114734182 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || ||||| || | ||||| || || ||||| | |||||||||| Sbjct 21262715 TGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGC 21262774 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| ||| ||||| || | | |||||||| ||| | |||||| | |||| Sbjct 21262775 TCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACG 21262834 Query 22868 A 22868 | Sbjct 21262835 A 21262835 >seq8 Length=97450195 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | | || ||||| |||||||| || |||||||||| Sbjct 32799413 TGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 32799354 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| || || | ||||| || || |||| ||| | || | Sbjct 32799353 TAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATG 32799294 Query 22868 AAG 22870 ||| Sbjct 32799293 AAG 32799291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356219871870286