Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2669 253 2e-62 seq18 192 6e-44 seq8 102 8e-17 seq6 102 8e-17 seq5 102 8e-17 >seq2669 Length=49141 Score = 253 bits (280), Expect = 2e-62 Identities = 527/780 (68%), Gaps = 6/780 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || ||| || || || || ||||| | Sbjct 22084 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATCCT 22142 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||| | ||||| |||||| | | || | || | | |||| || || | | | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 || || || | |||||||||||| || ||| ||| |||||||| || || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | | | | || || | ||||| | | | | | || || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTAT---CCTAACGTTGGTGATTATCTC 22379 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | | ||| | | || | | || || || || || | || ||||| || Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 22439 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| || | ||||| |||||||||||||| || || |||||||| | || ||||||| Sbjct 22440 ACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAG 22499 Query 13943 TCCTC-GtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 || | |||| || | ||| ||||| | ||||| || ||||||||||| ||||| || | Sbjct 22500 CCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTA 22559 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 | || ||||| || | | ||||||||| ||| || | ||||| | |||| Sbjct 22560 CAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGCA 22619 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 ||||| |||| || || || | | || ||| |||||||||||||| || | ||||| Sbjct 22620 AGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATATT 22679 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 | | || || | | | |||||| || |||||||| || |||||||||||||||| Sbjct 22680 CTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTA 22739 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||||||||| || || || || ||||| || || | || || | ||| ||||| Sbjct 22740 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTT 22799 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | ||||| || |||| || ||||| ||||| |||||||| |||||||| || |||| Sbjct 22800 GGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCA 22859 >seq18 Length=146158383 Score = 192 bits (212), Expect = 6e-44 Identities = 392/577 (68%), Gaps = 13/577 (2%) Strand=Plus/Plus Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA-TGTTAATCCT 13934 |||| || || || | ||||| ||||| |||||||| || || ||||| ||| | || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA-GAATAT 13993 ||||||| ||| |||| || | ||| ||||| | ||||| || || ||||| ||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 | | || || || ||||| || | | ||||||| || | | |||| ||||| | | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | ||||| |||| || | | | |||||||||||||||||| || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATAGCATTGAA 66703588 Query 14114 TAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 | |||||| | ||||| | | |||||| || |||||||| | |||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 |||||||||| || ||| | | || || |||||||| || | ||| || | ||| Sbjct 66703649 AGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTTG 66703707 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 | ||| | ||||| || |||| ||| |||| | ||| |||||||| |||||||| Sbjct 66703708 AATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAA 66703767 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGG 14352 || |||| |||| ||||| | | ||| || || | || ||| | | | Sbjct 66703768 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTTCCCAGTGCTG 66703827 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 || |||||| ||||| || || || ||| | |||||||| | || ||||||| | | Sbjct 66703828 AT--ATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTGT 66703885 Query 14413 ACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 |||| ||| || || | || | || ||||| || Sbjct 66703886 ACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 66703922 >seq8 Length=97450195 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||||||||||||||| || || ||||| ||||| || || |||||||| || Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 32799411 >seq6 Length=112758220 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||| ||| | || ||||||| ||| ||||| || | ||| ||| ||| ||| Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 || || ||||||||||| ||||| || || | ||||| || Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGC 9090605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || ||| || || || || |||||| | Sbjct 9090303 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATTCT 9090361 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || ||||| |||||| Sbjct 9090422 CATGAAGTCAAACGGATTT 9090440 >seq5 Length=114734182 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| ||||| || || || ||||| | Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 21262717 CCACAACGCGTTCTCC 21262702 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || ||| || || || || ||||| | Sbjct 21263924 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATCCT 21263866 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || ||||| |||||| Sbjct 21263805 CATGAAGTCAAACGGATTT 21263787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709038750800