Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2669 226 3e-54 seq8 102 8e-17 seq6 96.9 3e-15 seq5 96.9 3e-15 >seq2669 Length=49141 Score = 226 bits (250), Expect = 3e-54 Identities = 524/785 (67%), Gaps = 16/785 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || ||| || || || || ||||| | Sbjct 22084 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAA-TTCGACATGACTCCCATCCT 22142 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | |||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| | || || |||||| | | || | || | | |||| || || | | | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 || || || | |||||||||||| || ||| ||| |||||||| || || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCT--CGTTTATAATA 13608 || || | | | | || || | ||||| ||| |||| | || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTAT--------CCTAACGTTGGTGATT 22374 Query 13609 ATCTTAATAA---TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 |||| | | | | | | || | | || || || || || | || ||| Sbjct 22375 ATCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCA 22434 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || ||||| || | ||||| |||||||||||||| || || |||||||| | || ||| Sbjct 22435 AAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGC 22494 Query 13726 ATCAATCCTC-GtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 |||| || | |||| || | ||| ||||| | || || || ||||||||||| ||||| Sbjct 22495 ATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCC 22554 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 || || || ||||| || | | ||||||||| ||| || | ||||| |||| Sbjct 22555 TTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCA 22614 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||||| |||| || || || | | || ||| ||||| || |||||||| | Sbjct 22615 GCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAG 22674 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 || ||| | || || | | | |||||| || |||||||| || ||||||||||| Sbjct 22675 ATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGA 22734 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 |||||||||||| || || || || || ||||| ||||| | || |||| ||| || Sbjct 22735 GTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAAC 22794 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | ||||| || ||||||| ||||| || || |||||||| |||||||| || Sbjct 22795 TTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAA 22854 Query 14085 TGCCA 14089 |||| Sbjct 22855 AGCCA 22859 >seq8 Length=97450195 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 32799411 >seq6 Length=112758220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||| ||| | || ||||||| ||| ||||| || | ||| ||| ||| || Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 || || ||||||||||| ||||| || || | ||||| || Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGC 9090605 >seq5 Length=114734182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| ||||| || || || ||||| | Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 21262717 CCACAACGCGTTCTCC 21262702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569883777680