Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2669 381 8e-101 seq18 223 5e-53 seq6 129 8e-25 seq22 120 4e-22 seq8 111 2e-19 seq5 111 2e-19 seq4 91.5 2e-13 >seq2669 Length=49141 Score = 381 bits (422), Expect = 8e-101 Identities = 646/927 (70%), Gaps = 13/927 (1%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| | ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 |||| | ||||||||||| || | |||| || ||||| |||| || || | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 || || || | || || ||||| ||||||| ||||||||||| || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 || || | ||| | | || || || || || || || || || || || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAAC---GTTGGTGATTATCTC 22379 Query 42016 TCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 ||| || | | || | || | | | | | | || || ||||||| || || || | Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 22438 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | ||||| | |||||| ||||||||||| | || |||||||| || || || ||||| | Sbjct 22439 CACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCA 22498 Query 42135 GGCCACGCTTT-TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 | || | ||| || ||||| ||||| || ||||| || || |||||||||||||||||| Sbjct 22499 GCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCT 22558 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 42250 || || |||||||| | || | |||||||| | | | |||| |||| Sbjct 22559 ACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGC 22618 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || |||||||| || ||||||||||||||||| || ||||| |||||||| Sbjct 22619 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATAT 22678 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | | |||| || |||||||| || || || || | |||| |||||||| || || Sbjct 22679 TCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGT 22738 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||||||| ||||| || || || || |||||||| | |||||| ||||| || |||||| Sbjct 22739 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 22798 Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 | |||||| || | || || || || ||||| || ||||| |||||||| || ||| Sbjct 22799 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCC 22858 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCT 42550 | ||||| |||||||| | | || || ||| | | | ||| | | ||||| Sbjct 22859 AGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCC 22918 Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | || || || || | |||||||| || || || || || || ||||| | | Sbjct 22919 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGC 22978 Query 42611 CAGATATCATGATATTGAATTGGGAAA 42637 ||||||||||| || | | ||||||| Sbjct 22979 CAGATATCATGGTACTCGA-TGGGAAA 23004 >seq18 Length=146158383 Score = 223 bits (246), Expect = 5e-53 Identities = 410/593 (69%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || ||||||| | | || || ||||| | |||||| ||||| ||||| | || Sbjct 66703337 TGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 66703396 Query 42110 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA 42168 |||||||| || || || ||||| || || | || || ||||| ||||| || ||||| Sbjct 66703397 TTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAA 66703456 Query 42169 TGATCCAGAAAA-GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-- 42225 || |||||||| ||||||| ||||||| || |||||||| | || || ||| |||| Sbjct 66703457 AGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATG 66703516 Query 42226 -ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 42284 | | | |||| |||| | ||||| || ||||||| |||| |||| Sbjct 66703517 TAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCA 66703569 Query 42285 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGA 42344 | ||||| || ||||| || ||||| | | |||| || | |||||||| || || || | Sbjct 66703570 TTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAA 66703629 Query 42345 TCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 42404 | | ||||||||||||| || || ||| || ||| | | || || || || |||| Sbjct 66703630 TAAGGAGACTATACATTTTAGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATA-AAAC 66703688 Query 42405 ATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTA 42464 | | ||||| ||||| || | |||| | |||||| || | || ||| | || | || Sbjct 66703689 AGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTA 66703748 Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG 42524 | || ||||| |||||||| || |||| | || |||||||| | | || || ||| Sbjct 66703749 TGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGT- 66703807 Query 42525 TTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 || | |||| | ||||||| || || | || || || || | |||||||| | Sbjct 66703808 TTCACAGCTTCCCAGTGCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGG 66703867 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAA 42637 || || || || | ||||| | |||||||||||| || | | ||||||| Sbjct 66703868 TGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACT-AGATGGGAAA 66703919 >seq6 Length=112758220 Score = 129 bits (142), Expect = 8e-25 Identities = 196/280 (70%), Gaps = 17/280 (6%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || ||||||| || || || || ||||| | |||||| ||||| ||||| | || Sbjct 9090762 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 9090703 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 ||||||| || || || ||||| || || || || || ||||| ||| | || ||||| Sbjct 9090702 TTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCAAAA 9090643 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || || |||||||||||||||||||| | |||||||| | || ||| | ||| || Sbjct 9090642 GAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAACTCTTTGTCC----CC- 9090588 Query 42230 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 ||||| |||||| || ||| ||| || |||||||| || ||| Sbjct 9090587 -----------AATCCAGCGCAAAGCCCAGTCAGCCGCCTTCTTCACACAAGG-ATGGTT 9090540 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 42329 || || ||||| |||| ||| | | |||| || ||||| Sbjct 9090539 TCAATAGCATTGAAGAAATATTCTCTTTCCTTGGGATCTT 9090500 Score = 102 bits (112), Expect = 1e-16 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| || | ||||| ||||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| | ||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 41882 |||||| ||||||||||| || | |||| || ||||| |||| Sbjct 9090422 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCA 9090468 >seq22 Length=147524369 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 105169247 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 105169188 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | || | Sbjct 105169187 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 105169128 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 105169127 CTGTTTCTTATACCAT 105169112 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| |||| || || || || || | | | |||||| ||||| || || || | Sbjct 105166029 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGCTCACAGCTGGCTTCCAGG 105165970 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||| ||||||||||| || |||| |||||| | || ||||| ||||| ||| Sbjct 105165969 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 105165910 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 105165909 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 105165850 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 105165849 CGATGGCGTTTATTTGA 105165833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| ||| | || || || || || || | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || ||||||||||| || || || || || ||||| || | | |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 >seq8 Length=97450195 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| ||||| | |||||||||||||| ||||| |||||||| || || |||||||| Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 32799412 Query 42209 ATAAGTCTCTCTCC 42222 | | |||||| || Sbjct 32799413 ACCACTCTCTCCCC 32799426 >seq5 Length=114734182 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || |||||||||||||||||||| || ||||||| Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 42207 C 42207 | Sbjct 21262717 C 21262717 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 21263925 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 21263866 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| | ||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 41836 CATGAAATCAAACGGATT 41853 |||||| ||||||||||| Sbjct 21263805 CATGAAGTCAAACGGATT 21263788 >seq4 Length=117747451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/302 (68%), Gaps = 12/302 (4%) Strand=Plus/Plus Query 174404 TTTGCCAACACAGAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTA 174463 ||||| |||||||| || |||| |||||||||||| | ||| || || || || | Sbjct 78042707 TTTGCAAACACAGATGGGGGATTTTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAATT 78042766 Query 174464 ATTGGATTC-ACGGTGGGTCACGACT-ACCTCAGACTGG-TAGAGAATGATATAGAAAAG 174520 ||||| || | | | | || | |||| | || |||||| ||| ||||||||| Sbjct 78042767 ATTGGTTTTGAAGCAAAG--AAGAGTGACCTT-GTGTGTCTAGAGAGTGAAATAGAAAAG 78042823 Query 174521 CATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCG 174580 | ||| || || | ||| || ||||||||| |||| ||| | ||||||||| | Sbjct 78042824 TACATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACAAG 78042883 Query 174581 TGTCGATTCATCAAGGTATATAAACCTGGGGATGAGACTACCTCGACATACATGTGTGCT 174640 || ||||||| | || | ||| | || | || | | | ||| ||||||| Sbjct 78042884 TGCAAATTCATCGAAGTGCACAAATCCGGAGCTGTGTGTGC------ATATGTGTGTGCG 78042937 Query 174641 ATCAAAGTGGAAAGATGCTGTTGTGCTGTGTTTGCAGATTGGCCAGAATCATGGTATATG 174700 ||| |||||| || | ||| |||||||||||||| | ||| ||||| ||| | || Sbjct 78042938 CTCAGAGTGGAGAGGTTCTGCTGTGCTGTGTTTGCTGCAGAGCCTGAATCCTGGCACGTG 78042997 Query 174701 GA 174702 || Sbjct 78042998 GA 78042999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112673223120