Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2669 244 2e-59 seq18 136 6e-27 seq6 100 4e-16 >seq2669 Length=49141 Score = 244 bits (270), Expect = 2e-59 Identities = 588/880 (67%), Gaps = 30/880 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| ||||| || ||| | |||||||| || || |||||||||||||| Sbjct 23004 TTTCCCATCGAGTACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTTTGG 22945 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||||| || || |||||||| | | | |||||| || ||||| Sbjct 22944 ACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCAGCACTGGGAGGCT-------CTGAA 22892 Query 125118 AC----TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || |||| || | |||||||| || || |||| |||||||| | ||||| || Sbjct 22891 ACCCGATGAGAGACATTTTATATCTCATGTTCTGGCTTTCTTTGCAGCGAGTGATGGCAT 22832 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGT 125232 ||||| || || || || ||||| |||| |||| | || |||||| | Sbjct 22831 AGTCAATGAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA-AGTTACAGAGGCCCGCT 22773 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || |||||||| || || ||| | ||||| ||||||||| | | || | Sbjct 22772 GTTTCTATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTA 22713 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACG 125351 |||||| |||||| ||||| ||| | || | | ||||| || || || || ||| Sbjct 22712 TTGACACTTACATTAAAGATCC-CAAGGAAAGAGAATATCTCTTCAATGCTATTGAAACG 22654 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 |||| | | | || |||||| | |||| | || |||| | ||| | || || Sbjct 22653 ATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGCTGGACTGGGGACAAAGAGGCT 22594 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| | || | | ||||| || ||||| ||||| || ||||||||||| ||| | Sbjct 22593 ACGTATGGAGAACGCGTTGTGGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCT 22534 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGC-GCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||||| | || || ||||||||||| | | || || ||||| || || || || Sbjct 22533 TTTGCATCGATATTCTGGCTCAAGAAACGGGGGGCTGATGCCGGGCCTTACATTTTCCAA 22474 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 ||| |||| | |||||||||| ||||||||||||||||| || |||| ||| Sbjct 22473 TGAGCTTATTAGTAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAA 22417 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATG 125649 | ||| || | | | ||||| || | | ||||| | || | ||| | Sbjct 22416 GCACCTG-GTACACA------AGCCAGCGGAGCAGAGGGTCAGAGAGATAATCACCAA-- 22366 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 ||| |||||||| || ||||| || | || || | || || | | || || |||| Sbjct 22365 -CGTTAGGATAGAGCAGGAGTTCCTCCCGGAGGCCTTGCCCGTGAAGCTCATCGGAATGA 22307 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 | |||| | ||| |||| || ||||||||||| || | || || ||| || Sbjct 22306 ATTGCACTTTGATGAAGCAGTATATTGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGG 22247 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | |||||||| || | | ||||| ||||| | |||| | || ||||||| Sbjct 22246 GTTTTAACAAGATTTTCAGAGTAGAAAATCCGTTTGACTGCATGGAAAATATCTCACTAG 22187 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || ||||| ||||| || |||||| || ||||||| Sbjct 22186 AAGGAAAGACAAACTTCTTTGAGAAGCGAGTAGGCGAGTA 22147 >seq18 Length=146158383 Score = 136 bits (150), Expect = 6e-27 Identities = 390/586 (67%), Gaps = 34/586 (6%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| ||||| || ||| | ||||||| || ||| ||||| |||||||| Sbjct 66703919 TTTCCCATCTAGTACCATGATATCTGGCAGATGTACAGGAAAGCTGAGGCCACCTTTTGG 66703860 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || |||||||| | | | ||||| || |||| Sbjct 66703859 ACTGCTGAGGAGGTGGACCTTTCCAAGGATATCAGC-ACTGGGAAGCTG-------TGAA 66703808 Query 125118 AC----TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || |||| || | |||||| | |||||| |||| |||||||| | ||||| || Sbjct 66703807 ACCCGATGAGAGACATTTTATAGCTCACATTCTGGCTTTCTTTGCAGCAAGTGATGGCAT 66703748 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGG-TGTCGT 125232 |||| | || || || ||||| ||||| | || |||||| || | | Sbjct 66703747 ACTCAATGCAAACTTGGTGGAGCGATTTAGCCAAGAAATTCAAGTTACAGAGGCTGGC-T 66703689 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAA-CGTGCACTCGGAAATGTACTCTACACTG 125291 | ||||| || ||||||| | | |||||| | | ||||| ||||||| | || Sbjct 66703688 G-TTTTATGGCTTCCAAA-CTGGCATGAGAAGCATACACTCTAAAATGTATAGTCTCCTT 66703631 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACA 125349 ||||||| |||||| |||| |||| | ||| | | ||||| || || || || | Sbjct 66703630 ATTGACACTTACATTAAAGATC-GCAAAG-AAAGAGAATATCTTTTCAATGCTATTGAAA 66703573 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | |||| || | |||||| | |||| | | |||| | ||| | | Sbjct 66703572 CAATGCCT-------GTGAGAAGGCTGACTGGGCCTTGCATTGGACTGGGGACAAAGAAG 66703520 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGT 125468 || | || || || || | ||||| || ||||| ||||| | |||||||||| | ||| Sbjct 66703519 CTACATATGCAGAACGAGTTGTGGCCTTTGCCGCGGTAGAAGCAATCTTCTTTTTCTGGT 66703460 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||||| | || || ||||||||||| | ||||| ||||| || || | || | Sbjct 66703459 TCTTTTGCATCGATATTCTGGCTCAAGAAACAGGGACTGATGCCGGGCCTTA--CATTTT 66703402 Query 125529 ---AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 || ||| |||| |||||||||| ||||||| ||||||| Sbjct 66703401 TCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTTTG 66703356 >seq6 Length=112758220 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483 ||| | ||||| || ||| ||||||| || ||||||||||| ||| |||||| | | Sbjct 9090596 AGAGTTGTGGCCTTTGCCACCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAAGA 9090655 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||||||||||| || ||||| ||||| || || || | || ||| |||| Sbjct 9090656 TTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACACTTTCCAATGAGCTTATTAGC 9090715 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| ||||||| ||||||||| Sbjct 9090716 AGAGACGAGGGTTTACACTGGGACTTTGCC 9090745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741029909635120