Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2669 304 1e-77 seq8 96.9 3e-15 seq6 84.2 2e-11 >seq2669 Length=49141 Score = 304 bits (336), Expect = 1e-77 Identities = 616/906 (68%), Gaps = 30/906 (3%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 22122 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 22181 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATT 12956 |||||||| || ||||||||||| | || || ||||||| || | ||| | Sbjct 22182 TCCTTCTAGTGAGATATTTTCCATGCAGTCAAACGGATTTTCTACTCTGAAAAT----CT 22237 Query 12957 TTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTA 13016 | ||| | || | || || | | ||||| || |||||||| || ||||| ||||| | Sbjct 22238 TGTTAAAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCA 22297 Query 13017 AATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA 13076 || || |||||||| || | || || |||| || || | | || | | |||| Sbjct 22298 AAGTGCAATTCATTCCGATGAGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTA 22357 Query 13077 TATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGAT 13136 | || | | | | | ||| ||||| | | ||| ||| | | || | Sbjct 22358 TCCTAA---CGTTGGTGATTATCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGT 22414 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 |||| ||||||| || ||||| |||||||| || || || |||||||| || ||||| | Sbjct 22415 GCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCAT 22474 Query 13197 TTGAAAATGTTAGACCCGGCATAAG-CCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 | |||||||| || |||||||| || ||| ||||| || | ||| ||||| | ||||| Sbjct 22475 TGGAAAATGTAAGGCCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAA 22534 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGT 13314 ||||| ||||| || |||||||| || || ||||| || | |||| | ||| |||||||| Sbjct 22535 GAACCGGAAAAGAAGATTCCTTCTACAGCGGCAAAGGCCA-CAACGCGTTCTCCATACGT 22593 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | | ||| | | |||| |||||||| || || | || || || ||| Sbjct 22594 AGCCTCTTTGTCCCCAGTCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCAT 22653 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 |||| || || || || | ||| | | ||||||| ||| ||| |||| | | Sbjct 22654 CGTTTCAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAG----TGT 22709 Query 13435 CAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA 13490 ||||||| || |||||||| || || || |||||||| || |||||||| ||||| | Sbjct 22710 CAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGA 22769 Query 13491 AACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAA 13550 |||| | ||||||| || |||||||| | ||||| || | ||||| || || | Sbjct 22770 AACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGA 22829 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----G 13606 |||| || ||||| || ||||| ||||| || | || ||||| | | | || | Sbjct 22830 CTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAGATATAAAATGTCTCTCATCGG 22889 Query 13607 TTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTC 13666 |||| || || ||| | ||| ||| || || | || |||||||| | ||| Sbjct 22890 GTTTCAGA-GCCT---CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTC 22945 Query 13667 CAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAAC 13726 ||||| || || | || ||||| |||||| ||| ||||| | || | |||||||| Sbjct 22946 CAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTACTCGATGGGAAAG 23005 Query 13727 ACAACG 13732 ||| || Sbjct 23006 ACAGCG 23011 >seq8 Length=97450195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| ||||||||||||| || | Sbjct 32790598 AATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 32790657 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 32790658 CCAACAGGCAAGGCTTCTGTTAAAAA 32790683 >seq6 Length=112758220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || |||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 9090341 ATTCGACATGACTCCCATTCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 9090400 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||||||| || || || ||||||| Sbjct 9090401 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 9090441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965791285124