Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 2e-12 >seq14 Length=171410997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 5321 TCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTTTCCGAA 5379 || || || ||||| || ||| || || || || |||||||| | || | ||||| || Sbjct 150362790 TCACAGATGAGCTGCGCAGTCCGATCACCGTTTTTCACCTCAAACTTCGGT-TTTCCAAA 150362848 Query 5380 GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCAC 5439 ||||||||||| || || ||||| |||| || |||||||| || || |||||||| || Sbjct 150362849 ATTAAACAGCACGACACCAACATTTCCTCTATAATCTTCGTCTATGACACCAGCGCCTAC 150362908 Query 5440 GTCGATAAAGTGTTT 5454 || || ||||| || Sbjct 150362909 ATCTATGAAGTGCTT 150362923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447732702665440