Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 >seq19 Length=145277780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || ||||||||||||| |||| |||||| ||||| || || || || || ||||| Sbjct 24632907 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 24632966 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| |||||||| ||| |||||||| || Sbjct 24632967 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATC 24633026 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 24633027 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 24633074 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| ||| |||||||| ||||| ||||| || || | ||||| Sbjct 24628071 GCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATA 24628130 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || ||||| | | ||| || |||||||| Sbjct 24628131 TCTCCT-GACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCACATAGAACTGACA 24628189 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 24628190 GAGGGCATGGCAAGGAGGCAGTGCCATCAGG 24628220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340124492159826