Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq2171 569 1e-157 >seq2171 Length=2622 Score = 569 bits (630), Expect = 1e-157 Identities = 790/1101 (72%), Gaps = 12/1101 (1%) Strand=Plus/Plus Query 71540 CGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTG 71599 |||||| || || || | || ||| | || || || || || || | || || ||| | Sbjct 709 CGGTGGCTTCGCCTATTTGGCAGAGCTATCGAAAAATACCCCAAGTGCTGCCAACATTGG 768 Query 71600 TGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAA 71659 |||||||| |||||||| || ||||| ||||| || ||||| ||||| || || || || Sbjct 769 CGCTTATGCAGATATCGTACGCGAACGTGCGGTAGTGCGTGAGATGATCTCGGTGGCTAA 828 Query 71660 TGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAA---TTGCTGGA 71716 ||| || || || || || |||| | | | || | |||||| |||| ||||| || Sbjct 829 TGAGATTGCTGACGCCGGTTATGATCCGCAAGG---GCGCAGCAGTGAAGACTTGCTCGA 885 Query 71717 TATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGA--CAAAAGAGCGGTAGTGGT 71774 | |||| || || || || |||| || ||||| || || | || | || | Sbjct 886 TCTGGCTGAATCACGNGTATTCCAAATTGCGGAAAATCGCGCCAGCAAAGATGAAG--GC 943 Query 71775 CCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAG 71834 || |||| ||||| |||| || || | ||||| | ||||| || |||||| |||| Sbjct 944 CCGAAAGGTATCGAACGCATCCTGGAGGATACGGTTGCACGCATTGAGCAGTTGTATCAG 1003 Query 71835 CGACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGACG 71894 | || |||||||| || || ||| | ||||| || | | |||||||||||||| || Sbjct 1004 CAGCCGCATGATGGCGTTACCGGGGTGGATACCGGCTATCAGGATCTCAATAAGAAAACC 1063 Query 71895 GCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACC 71954 ||||| | || ||| ||||| ||||| || ||||| || || || ||||| || ||| Sbjct 1064 GCAGGTTTGCAAAAGTCGGATCTGATCATCGTTGCCGCTCGTCCTTCGATGGGTAAAACC 1123 Query 71955 ACGTTTGCGATGAATCTCGT-CGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGT 72013 || || || ||||| || || |||| | || || | | || || || ||| || | Sbjct 1124 ACCTTCGCCATGAA-CTTGTGCGAACACGCTGCGATGACGCAGGAAAAACCGGTACTGAT 1182 Query 72014 TTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACG 72073 || |||||||| ||||| || ||||| | |||||||| ||||| || || | || Sbjct 1183 CTTCAGCCTTGAAATGCCAGGCAACCAGATCATGATGCGTATGCTGGCGTCGCTGTCGCG 1242 Query 72074 CGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTC 72133 |||||| || || ||||| || || || || ||| | |||||||| |||||||| |||| Sbjct 1243 CGTTGACCAAACACGTATCCGTACCGGCCAGCTTGATGACGAGGACTGGGCGCGTATTTC 1302 Query 72134 TGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCT 72193 || | ||||| ||| || |||| |||| ||||| | ||||||||||| || ||| Sbjct 1303 CAGCACCATGGGCATTTTGCTGGAGAAGCGCAATATGTACATTGATGACTCCTCCGGCCT 1362 Query 72194 GACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAG 72253 |||||| || || |||||||||| || |||||| ||| || ||| ||| | || Sbjct 1363 GACGCCAACCGAAGTACGTTCCCGTGCGCGTCGTATTTTCCGTGAGCATGATGGCCTTAG 1422 Query 72254 CATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAAC 72313 | |||| ||||| ||||||||||| | ||||| || ||| || || ||||| || Sbjct 1423 CCTGATCATGATTGACTACCTGCAGTTGATGCGTGTGCCCTCTTTGTCCGACAACCGTAC 1482 Query 72314 GCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACC 72373 |||||| ||||| || || || || |||||||| ||||||||||| || | ||||| || Sbjct 1483 GCTGGAGATTGCTGAAATCTCCCGTTCACTGAAAGCGTTGGCGAAAGAGCTGCAAGTGCC 1542 Query 72374 GGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGT 72433 |||||||| |||| || | || ||| || || |||||||| |||||||| ||||| Sbjct 1543 TGTGGTGGCGCTGTCGCAGTTGAACCGAAGCCTGGAGCAGCGTGCCGACAAACGTCCGGT 1602 Query 72434 AAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCT 72493 || || || | ||||| || || | || |||||||| || |||||||||||||| | Sbjct 1603 CAACTCCGACCTGCGTGAGTCTGGCTCCATCGAGCAGGATGCCGACCTGATTATGTTCAT 1662 Query 72494 GTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTAT 72553 || || || || ||||||||| | | ||||| |||| || |||||||| | ||| | Sbjct 1663 CTACCGTGATGAGGTTTATCACGAGAACAGCGATCTGAAAGGGATTGCCGAAATTATTTT 1722 Query 72554 CGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTC 72613 || |||||||| || |||||||| || | ||| | || | ||||||||||| | || Sbjct 1723 AGGTAAGCAACGTAACGGCCCAATCGGTTCCGTGCGCCTGACCTTTAACGGCCAGTGGTC 1782 Query 72614 ACGGTTTGATAACTATGCCGG 72634 || || |||||||| || || Sbjct 1783 GCGTTTCGATAACTACGCGGG 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303223514263002