Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 >seq1 Length=185492789 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || ||| | || |||||||||||||||||||||| |||| Sbjct 122592727 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 122592786 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| || || || | ||| | ||| ||||| |||| || ||||| | Sbjct 122592787 TGATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGTG 122592846 Query 10257 AGAATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 |||| || |||||||| ||| | || |||| Sbjct 122592847 AGAAGCTGAAGACCCTCAGGATGCGGCTGCG 122592877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| | Sbjct 122595003 AGCTCCAAGACAAAGGTGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 122595062 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||||||||||||||| || ||||| Sbjct 122595063 TAGAAGCATACATGACGATCAAAAT 122595087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547357564837120