Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq1 120 4e-22 seq997 114 2e-20 >seq14 Length=171410997 Score = 161 bits (178), Expect = 1e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||||||| || ||||| ||||||||||||||||| | ||||| |||||| ||| Sbjct 32140966 AAGCCCACGTCACCACCGAACGTGCTGGGTTTCCAGTACTCTGGGGAACAGATGGGATTC 32140907 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||||| ||| | || || || || ||||| Sbjct 32140906 CCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTTTCCCCAAAGATA 32140847 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || ||| |||| || || || | ||| ||||| | ||| |||||||| Sbjct 32140846 GAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAACTCTAAAGCATCGATGTCA 32140787 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | || ||||| || ||||| |||||||| Sbjct 32140786 CCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTGT 32140743 >seq1 Length=185492789 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||| | || || ||| || ||||| || | || || Sbjct 140815812 ATGAGTCTGCTGGTTTGGAATAGTCGCTCATCCTCCCACTCAGGATGCTCCTGCTTGAGT 140815753 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||||||||| |||| |||||||| || || |||||||| ||||||||| Sbjct 140815752 ATGTCACACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 140815693 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | | | || || || | | ||||| Sbjct 140815692 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGTAGGTTCTCAGGGATGTGAGGAGGG 140815633 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| |||||||| | || ||||||| || || |||| Sbjct 140815632 TAGATCATCTCTACCTGAGTGTCTTTGACTGTAGGAGGATACACCTCTCCACCAAT 140815577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || || | | || ||||| || ||||| | | Sbjct 140813991 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGATCCTGGTG 140813932 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| ||||| || |||||||||||| ||| | |||| | | ||||| | Sbjct 140813931 TAGTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 140813872 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||| | | ||| ||||| Sbjct 140813871 GGTGGACTGTCAATCAAGTGTGTTCTGGCTGAA 140813839 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||| |||| || ||| || ||||| || ||| || Sbjct 141044999 ATGAGTCTGCTGGTTTGGAATAGTCGTTCATCCTCCCACTCAGGATGCTCCTATTTGAGT 141044940 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || |||||||| ||||| |||| |||||||| || ||||||| ||||||||| Sbjct 141044939 GTGTCACACACTCTCTTGTGCTCCCGAAGCCAGATGGTTATATACATCAGCAGACCAGGC 141044880 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| |||||| | ||| | || ||||| Sbjct 141044879 ACCAGACCAAAAACTTCTGGCCCCACAGC 141044851 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 9664 GGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCG 9723 ||||||| |||| || || |||||||||||||| |||| |||||||| ||||| Sbjct 141032362 GGATGTTTCTGTTTGAGTTTGTCACACACTCTGTTGTGCTCCCAAAGCCAGATTGTAGCA 141032421 Query 9724 TACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT 9783 | ||| || | |||||||||||| ||||| | || || || ||||| | ||| || Sbjct 141032422 TCCATTATCACACCAGGCACCAGACCAAAGACTTCATGCCCCACAGCAAACTGCAGGTTC 141032481 Query 9784 TCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATAC 9843 | || | | ||||| | ||||| | ||||| |||||||| | ||| |||| | Sbjct 141032482 TTAGGGATCTGAGGAGGGTCCATCATCTCTACCTGAGTGTCTTTGACTGTGGGAGGATTC 141032541 Query 9844 A 9844 | Sbjct 141032542 A 141032542 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 10331 AGGTAGAATCCTTGCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTA 10390 ||| || ||||| | ||| |||||||| |||||||| |||||||||||| ||| | | Sbjct 141034409 AGGAAGGATCCTGGTGTAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCACA 141034468 Query 10391 GTCCGCGTTGTAGATGGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || | | ||||| | || || ||||||||||||| ||||| ||||| Sbjct 141034469 GTGCACATTGTAAGTTGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 141034517 >seq997 Length=100386 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || | || || ||| | || || ||| || ||||| || |||| || Sbjct 12831 ATGAGTCTGCTGATTTGGAATAGTCGCTCATCCTCCCACTCAGGATGCTCCTGTTTGAGT 12890 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||||||||| |||| |||||||| || | ||||||| ||||||||| Sbjct 12891 ATGTCACACACTCTGTTGTGCTCCCAAAGCCAGATGGTTGTATACATCAGCAGACCAGGC 12950 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || | ||| | ||| || || || | ||||| Sbjct 12951 ACCAGACCAAAGACTTCCTGCCCCAGAGCAAACTGCAGGTTCTCAGGGATGCAAGGAGGG 13010 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| ||||||||| | ||| ||||||| || || |||| Sbjct 13011 TAGATCATCTCTACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCACCAAT 13066 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||| | || || ||| || |||| || |||| || Sbjct 64823 ATGAGTCTGCTGGTTTGGAATAGTCGCTCATCCTCCCACTCAAGATGCTCCTGTTTGAGT 64882 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||| ||||| |||| | |||||| ||||| ||||||| ||||||||| Sbjct 64883 ATGTCACACACTCTCTTGTGCTCCCAAAACCAGATGGTAGCATACATCAGCAGACCAGGC 64942 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| ||||| | ||| | || ||||| Sbjct 64943 ACCAGACCAAAGACTTCTGGGCCCACAGC 64971 Score = 93.3 bits (102), Expect = 6e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 9664 GGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCG 9723 ||||| || |||| |||| || |||||||||||||| |||| ||||| || ||||| Sbjct 74912 GGATGCTCCTGTTTGAGAATGTCACACACTCTGTTGTGCTCCCAAAGCCAAATTGTAGCA 74853 Query 9724 TACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT 9783 | ||| || | |||||||||||| ||||| | || || || ||||| | ||| || Sbjct 74852 TCCATTATCACACCAGGCACCAGACCAAAGACTTCATGCCCCACAGCAAACTGCAGGTTC 74793 Query 9784 TCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATAC 9843 | || | | ||||| | ||||| | ||||| |||||||| | ||| |||| | Sbjct 74792 TTAGGGATCTGAGGAGGGTCTATCATCTCTACCTGAGTGTCTTTGACAGTGGGAGGATTC 74733 Query 9844 A 9844 | Sbjct 74732 A 74732 Score = 86.0 bits (94), Expect = 9e-12 Identities = 193/288 (67%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||| |||| || || || | |||| |||||||| || | ||| | |||| |||| Sbjct 11277 AAGGGAAACCCCTTCACATTTTTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 11336 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCA--GATGA 8807 ||| | ||| ||||| | ||||||||| | ||| ||| | |||||| | || | Sbjct 11337 TTAAAACTCACTTCTCCACTGAAGGTGCTCAGCTTCAGGTA--CTGGGGAGAACCGACGG 11394 Query 8808 CGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGA 8867 || || | || ||||| | ||| || || || || || || | ||| ||| || | Sbjct 11395 GATTACCCCTAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTTCCCAA 11454 Query 8868 AGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGA 8927 |||| || | |||| |||||| | ||| | | | |||| || | || |||| Sbjct 11455 AGATAGCATCTGGACAAGGCTTTCCTGCCAGCAGGGCAGGATACAGTTCTATGGCATCGA 11514 Query 8928 TGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | | | | || || | | || ||||| |||||||||||||||| Sbjct 11515 TGGCACTGAAGAGAGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCTG 11562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708496795557280