Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq22 129 5e-25 seq8 129 5e-25 seq14 120 3e-22 seq4 114 1e-20 seq25 102 7e-17 seq19 82.4 7e-11 >seq22 Length=147524369 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||||| | ||| || || || ||| | Sbjct 124974682 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCC 124974623 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 124974622 ATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 124974563 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 124974562 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 124974503 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || ||||||||||||||||| Sbjct 124974502 GGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| || ||| || ||| | | Sbjct 136851170 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 136851111 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| || | || || | || ||||| | || || || ||||| ||| Sbjct 136851110 TCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCCTTG 136851051 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | ||||| |||| |||||| Sbjct 136851050 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 136850991 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || | || || ||||| |||||||||||| Sbjct 136850990 GTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATG 136850955 >seq8 Length=97450195 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||||| | ||| || || || ||| | Sbjct 30032859 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 30032918 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 30032919 ATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 30032978 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 30032979 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 30033038 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || ||||||||||||||||| Sbjct 30033039 GGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||||| | ||| || || || ||| | Sbjct 95921286 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 95921227 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || |||||| | || |||||||| |||||||| |||| | Sbjct 95921226 ATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTAT-- 95921169 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | | || ||||| || | | |||||| | | | || || || |||||| Sbjct 95921168 --CCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTGAT 95921111 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || ||||||||||||||||| Sbjct 95921110 GGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 95921075 >seq14 Length=171410997 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || ||| |||| || || || || |||||||| | ||| || || || ||| | Sbjct 137735174 TCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCT 137735233 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || |||||||| |||||||| ||||| || Sbjct 137735234 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 137735293 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | | || ||||| || | | |||||| | | | || || |||| |||||| Sbjct 137735294 ATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGAT 137735353 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || |||||||| |||||||| Sbjct 137735354 GGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 144150348 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 144150407 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| ||||||| | || ||||| || || || Sbjct 144150408 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 144150467 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | || || ||||| ||| | | |||||| | | || || Sbjct 144150468 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 144150527 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 144150528 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 144150574 >seq4 Length=117747451 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| ||||| || |||| | | Sbjct 92566651 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCA 92566710 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||| ||| | || || | || ||||| || || || | ||||| ||| Sbjct 92566711 TCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTG 92566770 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | || || |||| |||||| Sbjct 92566771 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATG 92566830 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 92566831 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 92566866 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 || || |||||| || || || || || | ||| || ||| || ||| | |||||| Sbjct 57051176 CATCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 57051235 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || | || || | || ||||| || || || || ||||| ||||| | Sbjct 57051236 CAGCTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 57051295 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| ||| |||||| | | ||||| |||| |||||||| || Sbjct 57051296 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 57051355 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | || || || || |||||||||||| Sbjct 57051356 GCCCATCAGGGTCTTTACGAAGATCTGCATG 57051386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| ||||| | ||| | ||| ||| Sbjct 57378931 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 57378872 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || || || || || || || || ||||| || | Sbjct 57378871 AGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGG 57378812 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| |||||| | | || || || | |||||||| || Sbjct 57378811 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 57378752 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 57378751 CCGGTCAGGGTCTTCACGAAGATCTGCAT 57378723 >seq25 Length=158037523 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 45424427 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 45424486 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| ||||||| | || ||||| || || || Sbjct 45424487 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 45424546 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | || || ||||| ||| ||| |||||| | | || || Sbjct 45424547 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCACC 45424606 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 45424607 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGC 45424655 >seq19 Length=145277780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || ||||| || | ||| ||||| Sbjct 136501827 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAG 136501886 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || ||||||| | || ||||| || || ||| Sbjct 136501887 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 136501946 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 | || ||||| || | || || ||||| ||| ||| |||||| | | || || Sbjct 136501947 -TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 136502005 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || | || || || |||| ||||||||||| Sbjct 136502006 TCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCAT 136502052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448273481290320