Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-34 seq6 156 7e-34 seq2988 147 3e-31 seq20 132 8e-27 >seq16 Length=152576986 Score = 158 bits (174), Expect = 2e-34 Identities = 183/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| ||||| || ||||| || ||||||||||| || | Sbjct 90348553 CGCCAAGCGCCATCGCA-AGGTCTTGCGAGACAATATCCAGGGTATCACCAAGCCCGCCA 90348495 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | |||| ||||||| Sbjct 90348494 TCCGCCGCCTGGCTCGGCGCGGCGGTGTCAAGCGCATCTCCGGCCTCATCTACGAAGAGA 90348435 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 90348434 CCCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCAGTCACCTACACCG 90348375 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| | |||||| | || || || | || || || | Sbjct 90348374 AGCACGCCAAGCGCAAGACAGTCACCGCTATGGATGTGGTGTACGCTCTCAAGCGCCAGG 90348315 Query 16671 GCCG 16674 |||| Sbjct 90348314 GCCG 90348311 >seq6 Length=112758220 Score = 156 bits (172), Expect = 7e-34 Identities = 200/276 (72%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || ||||||||||| || ||||||||||| || || Sbjct 19531372 CGCTAAGCGCCACCGCAAGGTTCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 19531313 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19531312 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19531253 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 19531252 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 19531193 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19531192 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19531133 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 ||| | | || || || || ||||| || |||| Sbjct 19531132 CCGCACCCTCTACGGATTCGGCGGTTAAGCTACTAA 19531097 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || || ||||||||||| ||||||||||| || || Sbjct 17207208 CGCTAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAAGGCATCACCAAGCCCGCCAT 17207149 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 17207148 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 17207089 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 17207088 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 17207029 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 17207028 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 17206969 Query 16672 CCG 16674 ||| Sbjct 17206968 CCG 17206966 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || ||||| |||||||| || ||||||||||| || || Sbjct 19587962 CGCCAAGCGCCACCGCAAAGTCCTGCGAGACAACATCCAGGGCATCACCAAGCCCGCCAT 19587903 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| || ||||| ||||| ||||| |||| || | |||| || |||| Sbjct 19587902 CCGTCGCCTGGCCCGGCGTGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19587843 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 19587842 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 19587783 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19587782 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19587723 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 19587722 ACGCACCCTCTACGGATTTGG 19587702 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 19421988 GCTAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 19422047 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || ||||| ||||| |||| || | |||| || |||| | Sbjct 19422048 CGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACT 19422107 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 19422108 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 19422167 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 19422168 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 19422227 Query 16673 CG 16674 || Sbjct 19422228 CG 19422229 Score = 141 bits (156), Expect = 1e-29 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 16928552 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 16928493 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 16928492 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 16928433 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 16928432 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 16928373 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 16928372 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 16928313 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA-TCTT 16703 ||| | | || || || || ||||| |||| Sbjct 16928312 CCGCACACTCTACGGCTTCGGCGGTTAAGTCTT 16928280 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 19372862 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 19372921 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19372922 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19372981 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 19372982 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 19373041 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19373042 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19373101 Query 16672 CCG 16674 || Sbjct 19373102 ACG 19373104 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || ||||| |||||||| || ||||||||||| || || Sbjct 19584817 CGCCAAGCGCCACCGCAAAGTCCTGCGAGACAACATCCAGGGCATCACCAAGCCCGCCAT 19584876 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19584877 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19584936 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 19584937 CCGCGGTGTACTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 19584996 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19584997 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19585056 Query 16672 CCG 16674 || Sbjct 19585057 ACG 19585059 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 19393453 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 19393394 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19393393 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19393334 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 19393333 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 19393274 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19393273 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19393214 Query 16672 CCG 16674 || Sbjct 19393213 ACG 19393211 >seq2988 Length=2711 Score = 147 bits (162), Expect = 3e-31 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 1587 CGCTAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1528 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 1527 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1468 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 1467 NCGCGGTGTGNTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1408 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 1407 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 1348 Query 16672 CCG 16674 ||| Sbjct 1347 CCG 1345 >seq20 Length=147274239 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || || |||||||| ||||| Sbjct 134813110 CGCCAAGCGACACCGCAAGGTTCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTAT 134813051 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 134813050 CCGGCGGCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAGGAGAC 134812991 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 134812990 TCGCGGTGTCCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCCGTCACCTACACCGA 134812931 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | || || || | || || || || Sbjct 134812930 GCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 134812871 Query 16672 CCG 16674 ||| Sbjct 134812870 CCG 134812868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072308961266