Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2669 194 2e-44 seq6 93.3 4e-14 seq8 89.7 5e-13 >seq2669 Length=49141 Score = 194 bits (214), Expect = 2e-44 Identities = 528/807 (65%), Gaps = 8/807 (1%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||| ||| || |||||||| || | ||| ||| ||| || ||||| | ||||| Sbjct 22079 TTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCA 22138 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | | ||||| || | |||| || || || || |||||||||||||| | ||| ||| Sbjct 22139 TCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATAT 22198 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||| | ||||| |||||||| | | || || || ||| ||||||| || | Sbjct 22199 TTTCCATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTC-CAGC 22257 Query 21303 ATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 |||| || || || ||||| || ||||| || ||| || |||||||| ||||| Sbjct 22258 ATAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATG 22317 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || || || | || | | | || | ||||| ||| | ||| Sbjct 22318 AGCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATT 22374 Query 21422 ATATTTATTATCCT-AGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480 || | | | | ||| | | || || | | | || || ||||||| || || Sbjct 22375 ATCTCTCTGACCCTCTGCTCCGCT-GGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGC 22433 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||| ||||| || ||||| || || ||||| || | ||||| |||||||| | || || Sbjct 22434 AAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGG 22493 Query 21541 CATTAATCCTCTCTTT-TTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 ||| | || | ||| || | ||| ||||| || ||||| | || |||||||| || | Sbjct 22494 CATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTC 22553 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 | || || || ||||| || || | ||||| || || |||| ||||| ||| ||| Sbjct 22554 CTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCC 22613 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 | ||||| | ||||| | || | |||| || || |||||||| || || | Sbjct 22614 AGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGA 22673 Query 21720 GATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 ||| | | |||| | ||| | ||| ||| |||||||||| Sbjct 22674 GATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAG 22733 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 | ||||| ||||| || || || || || || || ||||| | ||||||| | ||||| Sbjct 22734 AGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAA 22793 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | || |||||| | ||||||| ||||| ||||| |||||||| || ||||| | Sbjct 22794 CTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGA 22853 Query 21900 ATGCCAATATATTTTTTATAAAATATC 21926 | |||| | || |||||||| || Sbjct 22854 AAGCCAGAACATGAGATATAAAATGTC 22880 >seq6 Length=112758220 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| || ||||| | ||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | |||| || || || || |||||||||||||| | ||| ||| ||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTC 21297 ||| || ||||| |||||||| | | || || || ||| ||||||| || Sbjct 9090422 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTC 9090472 >seq8 Length=97450195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||||| ||| | ||| | | | | | Sbjct 32788765 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCAGCCATGACTGCAAATC 32788824 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 32788825 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 32788884 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 32788885 CCATAAAATCAAAGGGATTTTC 32788906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879776620880