Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2669 403 2e-107 seq18 241 2e-58 seq6 136 5e-27 seq22 122 1e-22 seq8 116 5e-21 seq5 114 2e-20 seq4 91.5 2e-13 >seq2669 Length=49141 Score = 403 bits (446), Expect = 2e-107 Identities = 652/927 (70%), Gaps = 13/927 (1%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||| | ||||||||||| || | |||| || ||||| |||| || || | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 || || || || || || ||||| ||||||| ||||||||||| || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || | ||| | | || || || || || || || || | || || || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCC-TAACG--TTGGTGATTATCTC 22379 Query 33255 TCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313 ||| || | | || | || | | | || | | || || ||||||| || || || | Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 22438 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | ||||| | |||||||||||||||||| || || |||||||| || || || ||||| | Sbjct 22439 CACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCA 22498 Query 33374 GGCCACGCTTT-TTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | || | ||| || ||||| ||||| || || || || || |||||||||||||||||| Sbjct 22499 GCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCT 22558 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33489 || || |||||||| | || | |||||||| | | | |||| |||| Sbjct 22559 ACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGC 22618 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 ||||| || |||||||| || ||||||||||||||||| || ||||| |||||||| Sbjct 22619 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATAT 22678 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | | |||| || |||||||| ||||| || || | |||| |||||||| || || Sbjct 22679 TCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGT 22738 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 |||||||| ||||| || || || || |||||||| | ||||| |||| || |||||| Sbjct 22739 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 22798 Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729 | |||||| ||| |||| || ||||| ||||| || ||||| |||||||| || ||| Sbjct 22799 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCC 22858 Query 33730 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 33789 | ||||| |||||||| | | || || ||| | || | ||| | | ||||| Sbjct 22859 AGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCC 22918 Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | || || || || | |||||||| || ||||| || || || ||||| | | Sbjct 22919 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGC 22978 Query 33850 CAGATGTCATAATATTGGATTGGGAAA 33876 ||||| |||| || | || ||||||| Sbjct 22979 CAGATATCATGGTACTCGA-TGGGAAA 23004 >seq18 Length=146158383 Score = 241 bits (266), Expect = 2e-58 Identities = 414/593 (70%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || ||||||| | | || || ||||| | |||||||||||| ||||| || || Sbjct 66703337 TGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 66703396 Query 33349 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33407 |||||||| || || || ||||| || || | || || ||||| ||||| || || || Sbjct 66703397 TTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAA 66703456 Query 33408 TGATCCAGAAAA-GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-- 33464 || |||||||| ||||||| ||||||| || |||||||| | || || ||| |||| Sbjct 66703457 AGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATG 66703516 Query 33465 -ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 33523 | | | |||| |||| | ||||| || ||||||| |||| |||| Sbjct 66703517 TAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCA 66703569 Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583 | ||||| || ||||| || ||||| | | |||| || | |||||||| ||||| || | Sbjct 66703570 TTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAA 66703629 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | | ||||||||||||| || || ||| || ||| | | || || || || |||| Sbjct 66703630 TAAGGAGACTATACATTTTAGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATA-AAAC 66703688 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTA 33703 | | |||||| |||| || | |||| | |||||| ||| |||| ||| |||| | || Sbjct 66703689 AGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTA 66703748 Query 33704 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33763 | || ||||| |||||||| || |||| | || |||||||| | | || || ||| Sbjct 66703749 TGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGT- 66703807 Query 33764 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 33823 || |||| | ||||||| || || | || || || || | |||||||| | Sbjct 66703808 TTCACAGCTTCCCAGTGCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGG 66703867 Query 33824 ATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA 33876 ||||| || || | ||||| | |||||| |||| || | || ||||||| Sbjct 66703868 TGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGA-TGGGAAA 66703919 >seq6 Length=112758220 Score = 136 bits (150), Expect = 5e-27 Identities = 198/281 (70%), Gaps = 19/281 (7%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || ||||||| || || || || ||||| | |||||||||||| ||||| || || Sbjct 9090762 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 9090703 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 ||||||| || || || ||||| || || || || || ||||| ||| | || || || Sbjct 9090702 TTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCAAAA 9090643 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CC 33467 || || |||||||||||||||||||| | |||||||| | || ||| | ||| || || Sbjct 9090642 GAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAACTCTTTGTCCCCAATCC 9090583 Query 33468 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33527 |||| |||||| || ||| ||| || |||||||| || || Sbjct 9090582 AGCGC-----------------AAAGCCCAGTCAGCCGCCTTCTTCACACAAGG-ATGGT 9090541 Query 33528 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 33568 ||| || ||||| |||| ||| | | |||| || ||||| Sbjct 9090540 TTCAATAGCATTGAAGAAATATTCTCTTTCCTTGGGATCTT 9090500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| ||| ||| || | ||||| ||||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 33121 |||||| ||||||||||| || | |||| || ||||| |||| Sbjct 9090422 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCA 9090468 >seq22 Length=147524369 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 105169247 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 105169188 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 105169187 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 105169128 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 105169127 CTGTTTCTTATACCATA 105169111 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | |||||||| || || |||||||| || ||||||||||| ||| Sbjct 105156131 GTCCCGGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 105156072 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 105156071 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 105156012 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||||||| Sbjct 105156011 ATGTGCTGTGGTCTTTCA 105155994 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||||| |||| || || || || || | || || ||||| ||||| || || || | Sbjct 105166029 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGCTCACAGCTGGCTTCCAGG 105165970 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 105165969 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 105165910 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || || || | | || || || || || ||||| ||||| || ||||| || || || Sbjct 105165909 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 105165850 Query 62748 CTATGTCTCTTATTAGA 62764 | ||| | ||||| || Sbjct 105165849 CGATGGCGTTTATTTGA 105165833 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || ||||||||||| || || || || || ||||| || | | |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 >seq8 Length=97450195 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| ||||| | ||| ||||||||||| ||||| |||||||| || ||||||||||| Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 32799412 Query 33448 ATAAGTCTCTCTCC 33461 | | |||||| || Sbjct 32799413 ACCACTCTCTCCCC 32799426 >seq5 Length=114734182 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || |||||||||||||||||||| || ||||||| Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 33446 C 33446 | Sbjct 21262717 C 21262717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 21263925 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 21263866 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 33075 CATGAAATCAAACGGATT 33092 |||||| ||||||||||| Sbjct 21263805 CATGAAGTCAAACGGATT 21263788 >seq4 Length=117747451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 166105 TAGAGAATGATATAGAAAAGCATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGA 166164 |||||| ||| ||||||||| | ||| || || | ||| || ||||||||| ||| Sbjct 78042804 TAGAGAGTGAAATAGAAAAGTACATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGA 78042863 Query 166165 AAGAGGACATCAAGTACACGTGTCGATTCATCAAGGTATATAAACCTGGGGATGAGGCTA 166224 | ||| | |||||||||| ||| ||||||| | || | ||| | || | || | | Sbjct 78042864 AGGAGAAGATCAAGTACAAGTGCAAATTCATCGAAGTGCACAAATCCGGAGCTGTGTGTG 78042923 Query 166225 CCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGCTGTTGTGCTGTGTTTGCAGATT 166284 | | || ||||||||| || |||||| || | ||| |||||||||||||| | Sbjct 78042924 CAT----ATGTGTGTGCGCT--CAGAGTGGAGAGGTTCTGCTGTGCTGTGTTTGCTGCAG 78042977 Query 166285 GGCCAGAATCATGGTATATGGA 166306 ||| ||||| ||| | |||| Sbjct 78042978 AGCCTGAATCCTGGCACGTGGA 78042999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922578011920