Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22 105 2e-17 seq8 84.2 6e-11 >seq22 Length=147524369 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 105164641 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCCCAGACGGAGACCGGTACCCCATACATG 105164700 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || ||||| ||| |||||||||| |||| || || || | Sbjct 105164701 CTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 105164760 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || |||||| Sbjct 105164761 AGCAACCTGTGTACAGAAATAGTAGAGTACACC 105164793 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| ||||||||||||||| || || |||||| || || || |||||||| | Sbjct 105162677 AGCGCCCAGGGGCGTTTGCTATTTACCTGGAGCCTTGGCACTTAGACATCTTTGAGTTCC 105162736 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 |||| | ||| ||||| || || || ||| ||| ||||| ||||| |||| ||||| Sbjct 105162737 TTGACTTGAAGAAGAACACAGGCAAGGAAGAACAGCGAGCACGCGATCTCTTCTTTGCAC 105162796 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| | | || | || |||||||| |||||| Sbjct 105162797 TTTGGATCCCAGATCTCTTCATGAAGCGAGTGGAG 105162831 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || || ||||||| | || || ||||| |||||||| Sbjct 105172099 CAGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTCTATAAGACCGTGTGGGAAATC 105172158 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | ||| | | | ||||| ||||| | |||||||| ||| |||||||||| Sbjct 105172159 TCTCAGAAGACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATCGATCAGAGCCAG 105172218 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | || || |||| | || || ||| || || ||||| |||||| Sbjct 105172219 TCTTTAAACATCCATATTGCTGAGCCCAACTACGGCAAACTCACTAGTATGCACTTCTAC 105172278 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 105172279 GGTTGGAA 105172286 >seq8 Length=97450195 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||||||| |||||| ||||| |||||| || |||||| Sbjct 32799411 GCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGCTA 32799352 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || || | | | ||||| || || || ||||||||||| | || ||| | ||||| Sbjct 32799351 AAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGA 32799293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303300797072684