Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq22 122 8e-23 seq4 122 8e-23 seq14 102 8e-17 seq25 100 3e-16 seq19 98.7 9e-16 seq8 89.7 5e-13 >seq22 Length=147524369 Score = 122 bits (134), Expect = 8e-23 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||||||||||| ||||||||| | || | ||| ||||| || || |||||||| Sbjct 136851188 ATGATGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAG 136851129 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| ||||| ||||| ||||| ||| | || | | |||||||| Sbjct 136851128 TCGGACAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTA 136851069 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| ||| || ||||| | ||| | || || ||| | Sbjct 136851068 GGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 136851009 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || | ||| || || | || || || ||||| ||||||||| Sbjct 136851008 TCGACCTCAAGAGTGATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATG 136850955 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| || || | |||| ||||| ||||||||||||||||| || ||||| | Sbjct 105164791 TGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 105164732 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || |||| ||| || | || |||||||||||||| || || |||||| ||| | Sbjct 105164731 TGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTCCGTCTGGG 105164672 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 105164671 ACTCAATGAT 105164662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | ||| ||||||||||||| |||||| || | Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGAC 124974634 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| | | |||||| || ||||| Sbjct 124974633 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 124974574 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || | Sbjct 124974573 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 124974514 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| || || || || || || || |||||||| Sbjct 124974513 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq4 Length=117747451 Score = 122 bits (134), Expect = 8e-23 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||||||||||| ||||||||| | || | ||| ||||| || || ||||||||| Sbjct 92566633 ATGATGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAA 92566692 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || |||| | ||||||||||| ||||| ||| | || | | ||||||||| Sbjct 92566693 TCAGACAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCA 92566752 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || |||| ||||| ||||| ||| || ||||| | ||| | || || ||| | Sbjct 92566753 GGTGGGAGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 92566812 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || | ||| || || || || || || ||||| ||||||||| Sbjct 92566813 TCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 92566866 Score = 116 bits (128), Expect = 3e-21 Identities = 167/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||||||||||| |||| ||| | || | ||| ||||| || || |||||||| Sbjct 57051153 ATGATGCCACCGCGCAGACGCGGCATCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAG 57051212 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| ||||| ||||| ||||| || | || | | ||||||||| Sbjct 57051213 TCGGACAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCA 57051272 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| ||| || ||||| | ||| | || || ||| | Sbjct 57051273 GGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 57051332 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || | ||| || || | || || |||||||| ||||||||| Sbjct 57051333 TCGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTTACGAAGATCTGCATG 57051386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||||||||||| | |||||| || || ||||||||||| Sbjct 57378920 GGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCC 57378861 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||| ||||| || ||||| || ||||| || ||| || ||| Sbjct 57378860 GGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTT 57378801 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | || || ||| ||| | || | ||| | ||| || ||||| || || Sbjct 57378800 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGT 57378741 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 57378740 CTTCACGAAGATCTGCAT 57378723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | | | ||| || | || || |||||||| || Sbjct 55387561 GCCGCCACGCAGACGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGA 55387620 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||| ||||||||| | | | | ||||||||| || Sbjct 55387621 AAGGGTGCGTCCATCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGG 55387680 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||||||||| ||| || ||||| | || | || || ||| ||| | Sbjct 55387681 GATGCCTTCTTTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCAC 55387740 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 55387741 CTCAAAAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 55387789 >seq14 Length=171410997 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 144150346 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 144150405 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || |||||||||||||| || |||| | | ||||||||| || | Sbjct 144150406 AGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 144150465 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 144150466 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCA 144150525 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 144150526 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 144150574 >seq25 Length=158037523 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 45424425 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 45424484 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || |||||||||||||| || |||| | | ||||||||| || | Sbjct 45424485 AGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 45424544 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | | | | || || ||| ||| | Sbjct 45424545 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCA 45424604 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || || || ||||||||| Sbjct 45424605 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 45424654 >seq19 Length=145277780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | |||||||||||| || ||||||||||| Sbjct 136501825 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 136501884 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | |||||| || || ||||||||||| || |||| | | ||||||||| || | Sbjct 136501885 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-G 136501943 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 136501944 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 136502003 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || | ||| || || || | ||| |||||||| Sbjct 136502004 CCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCAT 136502052 >seq8 Length=97450195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | ||| |||||||||||||||||||| || | Sbjct 30032848 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 30032907 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| | | |||||| || ||||| Sbjct 30032908 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 30032967 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || | Sbjct 30032968 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 30033027 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| || || || || || || || |||||||| Sbjct 30033028 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994143694080