Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2800 136 3e-27 seq25 127 1e-24 seq23 122 6e-23 seq9 118 7e-22 seq6 118 7e-22 seq24 109 4e-19 seq1 109 4e-19 seq11 104 2e-17 seq4 95.1 8e-15 seq22 93.3 3e-14 seq8 91.5 1e-13 seq14 86.0 4e-12 >seq2800 Length=3960 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3452 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3393 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3392 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3358 >seq25 Length=158037523 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 129799474 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 129799415 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 129799414 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 129799380 >seq23 Length=120012414 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| |||||||| ||||| || |||||||| Sbjct 76636545 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 76636486 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 76636485 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 76636451 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 20915247 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 20915306 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 20915307 GCCGGTATTTAGCCTTA 20915323 >seq9 Length=92629107 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| ||| |||| ||||| || |||||||| Sbjct 5256823 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATCGTAGGTAGGGACAGTGGGAATCTCGT 5256764 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5256763 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5256729 >seq6 Length=112758220 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||| |||||||||| |||||||| ||||| || |||||||| Sbjct 105844431 AAGCCTGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 105844490 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 105844491 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 105844525 >seq24 Length=120003353 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 119999317 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 119999258 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| | ||||||||||||||||||||||| Sbjct 119999257 TCATCCACTGATGCGCGTCACTAATTAGATGAC 119999225 >seq1 Length=185492789 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| |||||| ||| |||||||| ||||| || |||||||| Sbjct 104191013 AAGCCCGTTCCCTTGGCTTTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 104191072 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| |||||||||||||||||| || Sbjct 104191073 TCATCCATTCATGTGCGTCACTAATTAGATGATGA 104191107 >seq11 Length=89975685 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 33009805 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 33009864 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 33009865 GCCGGTATTTAGCCTTA 33009881 >seq4 Length=117747451 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || | ||| ||| || || || |||||||||||| Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || |||| ||||| ||||| ||||| || | || || || | ||| Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||| ||||||| || || || | || || Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||||| ||| |||||||| ||||||||||| Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 92566868 >seq22 Length=147524369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| |||||| ||| ||||||||||| ||||| ||||||||| || | || Sbjct 124974679 CAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATC 124974620 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 124974619 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 124974560 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | || || || Sbjct 124974559 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 124974500 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| ||||| || |||||||| Sbjct 124974499 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq8 Length=97450195 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| |||||| ||| |||||||||||| ||||| ||||||||| || | || Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | || || || Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | ||| ||||| || |||||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq14 Length=171410997 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| |||||| ||| |||||||||||| ||||| ||||||||| | | || Sbjct 64263842 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAGCCATC 64263901 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG-CCTTCTTTGT 38223 || | || || || ||||| || || | || ||||| || | | | ||||| || | Sbjct 64263902 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATC-AAGAGCAAGTCCTTCCTTAT 64263960 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 || || || ||| ||||| | | ||| ||| ||||||||| | | || | Sbjct 64263961 CCTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAGCGAGATGG 64264020 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| ||||| || |||||||| Sbjct 64264021 GTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 64264054 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| |||| ||||| ||| |||||||||||| ||||| ||||||||| || || Sbjct 137735177 CAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATC 137735236 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 137735237 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 137735296 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | || ||| ||||| | | ||| ||| |||||| || | || || || Sbjct 137735297 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGT 137735356 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| ||||| || |||||||| Sbjct 137735357 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 144150348 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 144150407 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || |||| || || |||||||| || || | || || || | |||| Sbjct 144150408 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 144150467 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||| ||| || || |||||| || | | || || | || || Sbjct 144150468 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 144150527 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || || |||| ||| |||||||| |||||||| || Sbjct 144150528 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 144150577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934292181622